| Id Trinity | FTRINITY_DN54189_c1_g2_i12 |
|---|---|
| Name Transcript | Ll_transcript_44240 |
| Sequence | CGGCGATATTAAAACCCTAATTTGCGATCTCTGCATTTCTCTCTTCTCTTCCCTTCTCTTTTCCTCGCAGCAATGGCACCCGAAGAGAGAGAGAACCCAT ACGAAGGTTTAGGAACCGGTGGCAAATTCCGAAAACGCCCTTTCCGAAGAACCCAAACAACACCCTATGATCGTCCTTCAACATCACTCACAAACCCTAA CAGAAACAACAACAACAATAACAACAATGGTTGGTTTTCAAAGGTTGTCAAACCCGCTCGTAAGTTAATCACTTATAGCGCTCATTCAATTTTCTCCTCC CTTTTCCGTAAGCGCCTCCCTCAATCTCAATTTTCAGGCACAGAAACAGAACAAGAAGTGAGAAACAATCATCTGGAAGAATCTGCATTTAAACAGGTTT CAATCAATTCCTCAGGCAAGAAACAAGTAACTGTTGGTAATGGTGAAAGTGATGCTCAAATTAATTGCCCTGATGGAGGTGGATTAACTGAACTTGAGAA GTTACTAAGACAGAAGACTTTCACCAGATCCGAGATTGATCATTTGACAGCACTTATGCGCTCAAGAACTGTGGATACACCTATTAGGGAAGAAGAGAAG CGCACAGAAGTGGTTCCTTCCGAACCAATGTTGTTTTCCGAACTAAAGGATGAAGATCCCAAAACACCCATAGTTGAAAATAGGATTGAAAACCATCTTC CTCTAACCCCATATGTTACTTCCAGTGTTCCTATTGAGGATGTTGCTTCACCTGCAGAGCTTGCAAAAGCTTACATGGGAAGCAGGCCTTCCAAGGTATC CTCATCAATATTTGGTATGCGAAGTCCTGCAGCAAGGGAGGATCCAGCTTTTTTAAAAAGTAATGATAACCTTCCTCTTAGCTCCCCTGTTATGTCAATT GTGCCAAGGACTGTTAAACATGTTGGGGTTCATGAAAATGGTTATCCAACCGCAAGAACTCGTGGAAGATCTGCAATATATAGTATGGCTCGAACACCTT ATGCCAGAATTTATCCAACCTCTAAGGGGATTGGGCGTGCTGTTGAAGGTGAGCCGTCATCTTCAACTCACTCTACGATGGATCAGGACATGCTTTATGG ATCTAAACAAGGGTCAGTAAAGCGTAGAAGTTCAGCATTGGATAATGATGTAGGATCTGTTGGTCCTATACGTCGAATCCGTCACAAGGCTAATCTATAT TCTAAAGGCTCGGGCTTACCTCCTTCTGGTAGTTCTCTATCTATTGCTAGGAGTGGACTCGGTGTTGGTGCTCCTCAACAACCCTCATCTTCCATGCGGA AGCCTATCATGTGGGATGAAGTTAAGCATAGCCATATGGATTTACCAGAAGAAAATGTGCAAGACACTAGACCTAGTAAGAGTGGCCCTTTACCCTCAAA ATCCAGCGAGATGGCTTCGAAGATATTGCAGCAACTTGATAAGATGGTTTCCCCTAAAGAGAAGTCATCTGAATCAAGGCTACCAAATGTGAATGATAAA TCATCAACGAAGTTGTCCCCTTCCATGTTACATGGACAGACTCTTCGAAGCATGGAAGCAGTAGATTCATCAAAATCGCTGGATACTGTAAAAGATAATA GATTCAATATTGCACCTGGAAAGTTGTCTGATAGTGCTCAAAAGTTAGCTTCACAGATAGACAAGGTTGAAAATGGTCATTTGAAGCTTCTTGCTCCTTC TGATGGACTTGTTCCATCTGTAACTAATGCAGATTCCAGAAATCCAAGGAATCAAACCAATTCTGCTGCGAAGTCCGTGGATTCTTTTGTGGTAAAATCT GCTTCATATCCTCCACAAAAGAAGAGAGCATTTCATATGAGTGCACAGGAGGATTGTCTGGACATGGATGATGATGCTTATTCTAATGGGGATATGTCCT CTGTTCTTCCCGTTGATAACAAGATGACAAGTCCCAATGCAATGACAGTGAAGGATACCTTTGGTACTGAATCCGTTGCACAGGAGAATACCCGATCATT ATCTGCAGTAATGGCATCCAAAAGTTCTACAATAAGTGAGGAAGCTCATGATAGGACTGATGATAATGCTGATGGGTCTAGGGTCGGTGCGAAAGTTGAT GTATCAACCTCTTTGACATCATCTATCTCCGATCCAACTTTTAAGCCAGCTACAGCAACTACAAGAACAAGTTTTGGTTCCCACAAATCTGCTTCACCAA ATGGATCAAGTGCTATTCCTCCAGTCTTTAATTTTGAGCCATCAAAAGACATAACCAACTCTGGTACAATATTTGGTTTGGAAAAGGTTGTTTCATCAAA GGGGCTTGATGCTGATGTTCCATTAGTGAACTTTGGCAGCATTGGAAATGCTGGCAAGGTCCCCCAAATGCTATTTACTTCATCACCAGTTGTTGGTGAA TCTACTTTGCCGAATTCAGGTGCTTCTTCTGACTCAAAGCTGGGGAGCTCGATCAGTTCTGCCACTGTTTCTGCTGCAACTGATTCTATGCCAAAAGTTC GTGAATCTGGTAATGTTGATGCTAAGACGAATATAGATTCTGTTAAGCCATCAGAAATTCCTGTTTCATCTGCAGTAACAACATCATTGTTCACACCACC AACAAGTGCATTTACTTTTGGCCAAAGTAATGGATCTCTTGCTGCAAGCTCTTCACTTTCCTCACCCTTTACCAGTCAGAATGTATTCAGCAGCTCACCT CTTGCAGCAAGCAGCAGCAGCATTAGTGCCAATAGCACTTCTTCCATAATTTCATCGAGCAGTAGCAGTTTCTCCAATCCGTTGGTGGCATCTTCATCTT CAATGACTTCCTCTTTCAAATTTGGTTCCTCTATTGTCCCATCAACAGGTTTACCTGTATCATCTTCTGTCTCAGAACCAGTGGAAACTAAGAATAGGGA AGTTGTAGGAAATGGTAATCTAAGCAGCACTGTTTTTGGTAGCTCATCTTCTGCTGTTGGAAACACAGGGAGTGGCCTTTTTGGTTTCAGTTCCTCAGCG ACGACTAGCCAGTCCCAGGGTTCTGTCATTGGTTCTAGCAGCGGATCAATGTTTACTGCTCAGGCATCTCCTGCTACCAGTGGGTTTGCAACTTCTACCC AGACCCAGTCGGTTCCACTTGGCTCATCGTCATCATCTTCATTTTTTGGGTTGACTGGGAATACATCCTTTTCATCTGGTAATTCATTGTTTCCTTCAAC TCCTGCCACAAATGCAGGTTTTTCTTTTGGGAGTTCATCATTTCCTTCTTCAAGTTCTGCTACAAACATTTTCAACTCTGGTACAACTTTTGGATTTGGT ACCCCTGCTTCTTCTTCGGCAGTCAACTCTGTAAGCTCCAACAATGTTTCAAGTTCTTCTTTGTTTGGGTCTTCTAGTTGGCAGCCCAGAGAATCGTCTC CTTTTGGGTCCGCATTTAATCAAACATCTACTGCTTCTGTTGCTTCTACTAGCTCCCCCACAATGTTTTCGTCAACTCCTCAATTTTCATTCACTTCAGC AGCAACCACTACCTCCACACAGCCTACTTTTGGAAATCCTAATTCTCCCTTCACATTTGGTTCAGCTCCTGTTAATAATGATCAGATGACTACAGAGGAT AGTATGGCTGAAGACACTGTTCAAGCAACTCCACCAGCGACTCCTGTATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTATATTTGGTCAGCAAGCAA CTCCACCAGCAACTGCTGTATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTGTATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTATATTTGGTCA GCAAGCAACTCCACCAGCAACTGCTGTATTTGGTCAGCAAGCAACTCCATCGGCAACTCCTGTATTTGGTCAGCAATCTACCCCAGTTCAATCAAATTTT GTATTTGGAGCATCAACTACATCAGGAGCCAATCCTTTCCAGTTTGCCAGTCAACAGAATACTACTCCACCAAACGCTTCTCCGTTCCAGGCTTCTGGCA GCGTAGAATTTAGTGCTGGAGGAGGGAGTTTCTCATTAGGCACAGGTGGCGGTGACAAGTCTGGTAGAAGAATTGTGAAAGTTAAAGGTAGACAGCGCAA GAGGTAGGACTATTGTTTATGGAAATGGTTACTTTCTATCATTGCGGCGACAAAGAAATAAGCTCTGCCGGATATTGCTTTTTACTTAGCAATCTGGACA AGTGATGCTACTGAAAGCTAATCAAAATATACAAGCTTTTGTCTGCTTCCTTTCTCCTTCCATATTTTCTTACAGAGTGGAAGGCTGATGTTTTCCAAAT TTTGTAGTTGTATGGTATGATGGAAAGTAATGTACTGTAATTGTAATGGTTTTAGGTCACAGGGTTTATGATTTGGTTAATTATAATTGCAGAAATCTGT GTTGTTGTTACTTGTACCATAACCAAAATTAAGTATGAATTTATGGATTAGCTTGTTGTAACTTAACAGTTGCAGTGAGCAATCAGTGAATGATTATTGC TGTTTGGCTTTCTGTTTCATGTTTTGTTTGGAGACTGATAAAATGTTTTAGTCATAATTTCATTTAGAGCCGGGGTTCCAAATATTCAGCAGC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_40494; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_44240
| Blastp | Nuclear pore complex protein NUP1 from Arabidopsis with 38.73% of identity |
|---|---|
| Blastx | Nuclear pore complex protein NUP1 from Arabidopsis with 38.51% of identity |
| Eggnog | nuclear pore complex protein(ENOG410XPV4) |
| Kegg | Link to kegg annotations (AT3G10650) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461146.1) |
| Pfam | Nucleoporin FG repeat region (PF13634.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |