| Id Trinity | FTRINITY_DN54225_c2_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_273666 |
| Sequence | AGCATGTCGACCATAATATCTATCCCCATCAAATTTCCTTGGCTCCGTCCAGCATATCATCATTCCCCGTGTCTCAAAAAGCTTTTCTTACACGCTCTCC AAAAACATAACGCGTTTTCTCACTCTTAACTTTGTAATTTGCCCCCCCCCCCCCCCCCCCTCTCTATTCCCCATGGAAACCCTTGCCTTCCTGATTTCAT TTTCAGAGTCATGATTTCATTTTCAAAGTAAACCCTTTTCACGCAGATTAACGCTCCTTATATTTTCTTCATTCATTTTCCTTATTAAAGGAAAAAGAAA TATTCTCATATTCATTCCATCGCGTTTCTGATTTTGTTCATTCCATCAAAAGTTGTGGTTTATTTGTTTGGATAAGAATCTGGTTGGATTTTAAATTCTG GGTGTGGATCAAGTTTTGATTTTTCTGCAGTTTCGAAAAGGGTTATTGAGATCTCCATGTCTTCAGGAACATCATCGTATTGGTGTTACAGGTGCAGTCG TTTCGTTAGGGTATCGAGGCAGGACACGGTGGTTTGTCCAGATTGTGACAGCGGTTTCATCGAGGGAATCGAGCAACCGGCGCGTGCTCTTCACGTCGGC GGACGCCGGCGGCGGTTTCCCGAAGCTGCGATGTATATGATTGGCCAGCGCCCAAGTTTTGATCAGAATTCTCGCCCCCTTATTCGTCGAACCCGCCGCA ATGGTAGTAACCGGTCACCGTTCAATCCGGTCATCGTCCTGCTCGGAAGCGGTGGTGGTGGTTCCACGGAGGGGGCAGCTGAGCAGGACAGCGCGGAAGG TCGCGGGTTTGAGCTCTTTTATGATGATGGTGCAGGTTCTGGTCTTAGGCCTTTGCCTCCTAGCATGTCTGAGTTTCTTCTTGGATCAGGAATTGATAGG TTATTAGAACAGATTTCTCAGATTGAAATCAATGGTATTGGAAGGTATGAACACCCTCCTGCATCAAAATCTGCAATTGATTCATTACCAACAATTGAAA TTTGTGATGGTCATTTAGAATTGGAAACACATTGTGCTGTTTGTATGGAGCCTTTTGAATTTGGCACTTCAGTTAGGGAAATGCCTTGTAAGCATATATA CCATGAAGAATGCATTCTTCCATGGCTCGCACTTCATAATTCGTGCCCCGTTTGTCGCCATGAATTGCCTGCTGATACTGTCCCAAATCAGAATACACCT TTAACACGGAATTCGCCGAACTCTCTTGCTTCGAACGAAATTGAAAATGATGGATTGACTATTTGGAGGTTTCCAGGGGGAGGGTTTGCTGTAGGGAGGT TTTCTGGTGGGAGAGGAGGTGCTGAGAGAGAGCTTCCAGTTGTTTATACCGAAATGGATGGTGGTTTTAACAATGGTGGTGAACCCCGGAGGATTTCCTG GTCATCTAGAGGGAATAGTGGAAGGAGAGAGAGTAGTGGTTTCAACAGGTTTTTCCAGAACTTGTTTGGTTGCTTTAGAGGTGGTGAAGTTGGTCCCCGG CAACCTACTTCAAGTACAGCATCTCCATCCACCGGAAGGGCAAGTTCGCCACATTCCAATGTGGATCCCTCTCCACGTTCGCGCAGAACTTGGTCTATGG ATGTGAACAGTGGAATGAGTTCATGGTAAATGGTAGCTTAAACAAGCAGTGGAAGCTAAAAATATCAACTTTGTTTCGGTGTTCCCCAACTGAGACACGG AAAAAAGTTCTGTTTCAGGGTCATATTTGTCGGTTGGTCAATGTGCACTTAATGGGATGCACTTGAGCCTACAATGCACTGTAATCAACAGGATTTCACA ATTCTCACATTTTCAGCTGCAAATGATGTATGGTACGAGAGATCAATGTTGTTGTTTTGGATAGGGAATTGTTACTGTAAAAGTCATCAGTCATTGTCTA TATTAACAGTAGCCAATAGGGACAAGAAGCAGCAGCAATGGCATAAACCAACAGAGAAGAACCAAATAGGAAGAAAACCTGTGTGGTATTTATGTAACTT TTGGGCAGGGAACATTATGATCATTATCTTTATTCTAGTTTGTTAATGAACCGAAACGCCTTCATATTTTTTTTTATTTTATGTCTCTTCTTGTTCAACA TTCGTAAAATTAGTTAGCTTCAGTTTATGGTGATTTTCAAATTTATGACATCATTTGTCATTGTTTTTCTCAAAGAAACCCATAATGTTCATATGCATGA TAAGCTTATTGCCTCAAATTGTTTGTTAATGATGACTTATTTGCTGCTGGAGCTATAAGCTCACTTTTACCCCAACACCATTATATCTGTACAATTTTCT CTAAGAAATCCAATGTGAATTGAATCCTTGGTACCTCTTTGTAGGCTGATATTGTGACTGTAATATTGTTCATCTTGTGTATTCTCTGGTTTAGTTTGTG TTATGATACAATCAATAACTAACTACTTTGATTGGATCATAAAAAATAACAATATTACTTATAGGGGCATGGTTGACTGGTTGAGATCTAAAGACATGGT TTCGAGTCCCCGCTTGAATATTGTTAGTTTTATTTGGTTAGCTTCTCCATTAGAATTCTATCTGTTTAACATGTTCACGGCGATTGTAATAAGACAGCCC CTTGAGTTAGATGCAGGTCGCGAGATGGGAGTAAAGTACTAGTGAAGTTTCTTGGTGTTTGGTCCAACAAGATCAGTATTGTAGTGCTATTTTTGCTCTG GTGGTACAAGGACACTCACTGTTAATGGCATTTCTGGACTGAACAGAAGGATCTATGTCGAATATGCCTATTCATCGATGGTTCTATGGTAATTGGTGTG TGAAAGCTCAATTTTTCATCCTACTGAGATTCCATCTTTTGGGCAACCTAAAGGTTTCACATGTTTATTCATTCATGTTCCATTGTCTCTATCCTTGTTT ACTAAAACAAAACCATTTACATTGTGTTATTCTTTCATAAATAACAATATCCATCATTAAATATGTGAAGTATTTGTACAAATTCTAATGTTAATATTAC ATATTTGTATCTTTTATTATCAAATTCCTACCAAATAATCCTTAAGAATCTGTAGTCAGTAACAATGATTAGTGGGTCTAATGCCCATTGTTTTCCTCAA CTTACCAAAAGCTTGAATTTTCTTTAGCAGCTCCTACAAGCCATTGTAACATGTATGCATACTTTTAAGTAAAAACTAAAAATAAACAAATGTTCAATCT ATGTCCAGATACATAGTACTTGTTTTGGCAACAACAACAAAAAGCCTACCTGTCTTGTACACTTTTGGTTGGAACTATTATTGGG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_40828; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_273666
| Blastp | Probable E3 ubiquitin-protein ligase RHC2A from Arabidopsis with 48.48% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin-protein ligase RHC2A from Arabidopsis with 50.78% of identity |
| Eggnog | zinc ion binding(ENOG41121N2) |
| Kegg | Link to kegg annotations (AT2G39720) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419778.1) |
| Pfam | zinc-ribbon (PF14369.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |