| Id Trinity | FTRINITY_DN54311_c1_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_197003 |
| Sequence | CTTATATTCTCTAACATAGTAACGAAAAAGAAAAAATTGTGGTGTCTAAAATAAGCATGATATAAAATAAAATAAAAAAATATCCCCTTCCAGACACGAG TGACTGCGATCCCAATCAAATTCTGAAACACTGAAACCCTAAAAGTTTGTTACACTTCCAACCATACTTCATGGCTCGGAAGCGAAAGCTCGCACCCAAA TCAACGCAATCATTCGAACCCCCACTCAAGCAACAACAACAACCTCAACCAGTAGTAGAACCCGAAGCAGAAGAAGAAGAATATGAGGAAGTTGAAGAAG AAGTTGAAGTAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGATCCCCAAGAAGAAGAAGATGATGATGAAGAAGAAGAAGATGAAGAAGAAGAAGA CCAAGAACAACAACAACAACATGAGTCTGATGATGATCCTATCGAGAAGCTTCTAGAACCTTTAACGAAGGATCAGATTCTTATTCTACTTTCTGAAGCG GCTACCAAGCACCGCGATGTAGCTGATCGGATCCGCAGGATGGCTGATGCTGATGCGGCGCATAGGAAAATCTTCGTGCATGGTCTTGGATGGGATTCCA CCGCCGAGACGTTAATCAGCGCGTTTCGGCAGTACGGCGAGATCGAAGATTGCAAGGCGGTTTCGGATAAGGTGACAGGGAAATCTAAGGGGTATGGGTT TATTTTGTTTAAGACGCGCCATGCAGCGCGTGAGGCGTTGAAGCAGCCGCAGAAGAAGATTGGTAATAGGATGACTGCTTGCCAGCTGGCGTCGATTGGG CCGGCTCAGCAGCAGCCTGTTGCTGGTTCTGTTGCTGCTCCGTTGGTGGTGCCGCAGGCGGTTTCGGCACCTGTGGGTTCGGAGTACACGCAGAGGAAGA TCTATGTGAGTAATGTTGGGGTGGAATTGGACCCGAAGAGGTTGCGTGTGTTTTTTTCGAAGTATGGTGAGATTGAGGAAGGGCCATTGGGGCTTGATAA GGTCACTGGAAAACCGAAAGGGTTTTGTTTATTTGTGTATAAGAGTGCGGAGAGTGCCAAAGGTGCTTTGTTGGAGCCGCATAAGGAGTTTGAGGGGCAT ATTTTGCATTGCCAGAGAGCGATCGATGGACCTAAGCCAGGGAGGTTGCAACCACCACCACAAGGGAATACTCGGGGGATGCAGTTTCAGAGGAGTGAGA ATGCTGGGTTTATTGGTGGTGTTGGGGTTGGTGGTGTTGGTGGCAGTGCAGCTGCTGCTACACCGGGTCACTTGATGGCTCCAGCGGGGCCAGGGATCGG GTTTAATCATGGAACAGTTGCGGCTGCGCAGGCACTGAATCCGGCTCTTGGACAGGCACTGGCCTCTTTGCTTGCGTCACAGGGTGCTACATTAGGGCTG ACTAATTTATTGGGGAGTCTAGGACCAACTGCGGTGGTTAATCCTGCTGTTCCGGCTGTGGGGCATGGGGTGCAGGCTGGTTACACTGCCCAGCCGAGTA TAACCCAGGGTGTTATTGGAGGATATGGGAACCAGATTGCATATCCGACGAACCAGCAGCAAATAGGGCAGGGTGGTTCTGGAAGAGGGCAACCTGGAGT TGGGCAATATGGGGGCATTGCCCATTACATGGGGCAGCAGTAGGAGCGGCCAATATGCCGGTATGGTGTATTCATTTTGTCATATAATTTTATTCTTTTA CTATTTATTTTGCTTTTCTGAGGGGTGAGCCTCAATGCAATGGTAAGGTTGCTGCTTAGAGGGTACAACTTCAAATACTGGAAACAACAAGGTATGACTG CATACATCTCCCAGCCCTAAATCCCACTGGGCGGGAGCTTCGTGCACCATGCCACCCGTTTACTCTTTAGTTTGATTTTCTATCCTTTGAGTGCTATATA AATGTCTGTGCTATATATATATATGTGTGTGTTTGTTTCTTTTACTTGTGATGAGAAAGAAGGAATGTTTTGGAGAAAGTTAAAGTGAAGTAGTTTTTCT TGTTTCATTTGAGTGATTTTAATACTTAGTGTGTCAAATAAGAATATAGGATATATTGATTTGATACCATGGAGTCAGAGTATTTACTTGCTTTTGCTTT TCCCCCCTGCTAAGTGCTAAGTAACACTTCCTTTGCCTGCACTTGTTGTGCTCTTGAATATATATTGGTGTGTCAGGAACATAATGTATTATTGTGTTTT CATATTTGTTGATTGGAGTTTAGTTGTTTGTATCAGTGTCACCAGAGAGAGATAGAGAGGACCAAAACACTTATGTTAGACTATCAAGATGGAAATCTTT TGTGTTATGACTTATGTCTTTGGAATTTGGGTGATCAATGAGAGTGTAAACATGTGCTACTCAGAAATGTGATGCAATGTTATATAATAATGTAATTATT TTAGAAAACAATGTAGACAAATGTGTGTGCGTTCATACTTGGATAGAGATTTCTATATAAGTTCTAACTCATCAGCAGTATCTGCTTCCATATCAAGCTG TTATGGGCTTGTTAATATGTTTTGTATGTTAAATTCGTATTTTTTGTTTTGTTTATATATGCTTGCTGCCTTGCTTTTTCACCCGAAGCCCTGAAGTCAA ATCTAGCCTAACTAGTTACTGTTTTCTGCATGTGGCACTTTTCATTTACCATTCTATTGGAGTGAACCATTTTATAATTAGGCATTCATGTTGCTTAGTA TATCTCATGATTGTTATGCAGGACAGTTACATTCTACATTACAAATTGCATGATATATTTTTGATTGTTTTTTTCTTTTAAGTATGTAAGTTTGTTATTT TAAATCAAATATCAAAAGAAGATCTAGCTAAAATATATATGAAGGAAGAAACACATGAGTGGATAGATTATATATAAGAAATGTGTTTTTTTTTATTATA ACTTAATTAAGAATTTTGAATTTGATTATAACAACAAAGTGCAGGCAGATTTTTAGGAATGTTTAGGATATTTGTTTGCAATTCAGGCAGGTGATAGTCT TAACTTCTGAGAGTTTGACAAAAACTGATTAATGTATATGGAATTATGGGCTGCTGCATAGAAGGCTCGTGCCTAATCTTCTCCGTGTTACTGTTGTTAA TTTCATAAGAAATATAAGGGATTTGTGTTATTTGCACTTGGAATTCTGAAAGCAAGTGAAACAAGGAATGTTGCAAGGCTATATCATATGCATTGAAGAG CGCATCAAATTTCACTCATTTGTTAACCTCAGGCTTTTTTAAAATGCTTTTATTTCGAGCTTTTTTTTTTGACAAATTATCATTCTTGGTTTCTTCTTAT TTGAGCACAGTATTTACTTCACCCTACATTTAGTTGGTCAGGGTTGTCTAATTTTTAAAATATAGTTTTTTATTTTATAAAGTAGCCTTTATAAACAATA ATTTATGTTCTTAGCATGTTAAAATGTGAAACTATTTTAAGCTCAGCATTTTACTTTTAGTAACAATCAATTTATCTAAAACAAGGTTTTTGGACCCCTT CTTTCCGTATTTCTCGCTTTGAAGTTGTTTTTCATGCTATTTTATTATTGACTTTGCAGATTCCACATAAGTGCACCAGTCTTTTATTACCGGCCTGTTG ATTCTTCTGAAGTTTAAGGAGCTGATGCAATTGCCGTATTTATAATGAAATGTTTCTTACTACAATGATCAGAATATTTTAATTAAGAAATGGAGTTCTA TTTTCGCTACCTACTTTTCTTCTTTGCTTTCACTTCAAAATATTGTAGTATTTTGACTTTTAAAGTCTTATGGAACTATTTTAGTACTCTGAATTTTAGT TTTATCTGTACTATGACGAGCCTATGATGCTCTACCTATTGTGTTTTGAAACTTGTTTGTGTGGACCACTGTGCTTCAACTTGATATTTCAGGAACTGTT CCACAGTGTTTTACATGGGCTATTGGATAACGGAGACTGTTTTCCCTCAGTTTTAGTACTTTTTTATTTCTCATTTCATTCATATTTCCTTTCTTCTTCA GCATAGAATCATTGAAATGAAATTTGCATGATATGCTTAGTACTATCTGTCATATTATTATCTATCACTTGAAAAAAAAATGGTTTGAGACCAATATGTC AAGTTTTTCTTTCCTTTCTTATACTTGTGTTAAAAAGTATACCTACCTATTTTTATACAGTTATCTTGCGTGTTTGACAGCTACCGTTTTATAAACATGC ACCAATAGTGGAATCAGTCTAAAATAAAAAACCAAAGAAACAAATACTTTCCATATAAAATTAGACTTCATCCTGTTTCTAAATTACCACATTTTGAGAA ATCCTTTTAGACGTTGTAGTTGCTTGTATGAATGTGGTGCAACTACAACCACCCAACAATGTAAAAGCTAAAAACAGGGCAGACAATCTTTCTTCTCCTC ATTTTCCATTTTCAACATGTATTTCACATACTTTTAGTCATGCTTATTTAAAAACGACCTTTGTGATATGTTGCAAGTGCTATTTTTTTAATCATATTTT CTGCTCACAACCATAATTTTATGATTTTTTATGTCGTCAATTAAGTTCCTCTTCTCTTTCCACTCTATCTTATCTTTTATGAAAGGACTTTGTTGATTAC AAACAAAATCTTTATCCTTAGGGTCTGTTTGGGAGTTAGGAGAGTTAGGAGGGGAGGGGATGGGAAGGAGAGGGATGAGAGGGTTAAGAAGGGGGAAAAG AGAGTTATCCTCTATCTTGTTTGGGAGTATGAAATTTAGACGGGGGTTAATCAATGATAACTTTTGAATATTTTTTATTTTTCCTTTATATATGTAATTA TCAATGAG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_41550; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_197003
| Blastp | UBP1-associated protein 2B from Arabidopsis with 51.62% of identity |
|---|---|
| Blastx | UBP1-associated protein 2A from Arabidopsis with 66.8% of identity |
| Eggnog | Rna-binding protein(COG0724) |
| Kegg | Link to kegg annotations (AT2G41060) |
| CantataDB | Link to cantataDB annotations (CNT0001580) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019458179.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |