Ll_transcript_196462

• Id Trinity: FTRINITY_DN54320_c0_g2_i1
• Name Transcript: Ll_transcript_196462
• Sequence: GAGCTGTTGAGTGCTACCAGCGCCAAATTAAAAAAATAGGTTGCAATTTGAAGGGCATTATCGTCCCGTCAAGAATTCGTCATTTCCTACATCTATTTTT CAACGGCGACACTGAGCTGAAAACTGAAGACTCTCTTTCCTAACTTTTCTTTCTCTTTCATCGTTTCCGAACCGGGCCGAACCGAACCGAACCGAACCGA GCTAGACCATGGGAGTGCCAGCGTTTTACCGGTGGCTCTCGGACCGGTACCCGCTCTCCATCACCGACGTTGTGGAAGAAGAGCCCGCCGACGGCGGCGG CAGCGTTCTGCTGCCGATTGATGTGTCTAAACCTAATCCCAACGGCATAGAGTTTGACAACTTGTACTTGGATATGAACGGTATAGTTCACCCTTGTTTT CACCCTGATGGCAAGCCTGCTCCTGCTACCTATGATGACGTATTCCAATCAATATTTGATTACATTGACCACATCTTTTCGTTAGTTCGTCCAAGGAAGC TTCTCTATCTTGCTATTGATGGTGTTGCACCAAGAGCCAAAATGAATCAGCAGCGTTCTCGGCGCTTCCGAGCAGCAAAAGATGCAGCTGATGCTGAAGC CGAAGAGGAAAGGCTGAGGAATGAATTTGAGGGTGAAGGACAACTTTTGCCCGCTAAAGAGAAGCCTGAAACATATGACTCAAATGTCATTACCCCTGGC ACTCAATTTATGGCAAAACTGTCAGTGGCACTTAAGTCTTATGTACAGACTAGATTGAATGACAATCCTGGATGGAAGAATATAAAGGTTATACTTTCTG ATTCAAATGCACCTGGTGAGGGCGAACATAAAATAATGGAATACATCCGGTTACAACGCAACCTTCCTGGTTCCGATCCTAATACTCGACATTGTTTGTA TGGGTTGGATGCTGATTTGATTATGCTGTCCTTAGCTACACATGAGGTTCATTTCTCAATACTGAGGGAGGTAATTACTTTACCCGGACAACAGGACAAG TGTTTTCTGTGTGCCCAAGTTGGCCATTTTGCAGCTGATTGTCCCGGTAAACCTGGCACTGAAGACAAGGACCAGAGTTCTGCTGATGATACCCCAATTC ACAAGAAGAAATACCAGTTTCTTAACATCTGGGTGCTGCGCGAATATTTGCAATACGAATTGGAGATTCCGAATCCTCCTTTTGTGATTGACTTTGAACG ATTAGTGGATGATTTTGTGTTTCTATGCTTCTTTGTTGGCAATGACTTTCTTCCACATATGCCAACACTAGAGATCAGGGAGGGGTCTATAAATTTATTG ATGCACATATATAGAAAGGAATTTACTACCATGGGTGGTTATCTTACTGATGCGGGTGAGGTTTTCCTAGACAGAGTGGAACATTTTATTCAGTCCGTTG CTGTTCATGAAGATCAAATATTTCAGAAACGTGTTCGGATTCAGCAGGCTGCGGAAATTAACGAACAGATGAAAGCTAGGTCAAGAGGAGAAATGCCTGT AGAGCCACGTACCTCAATTGTGGATAAGGTTAAGTTCGGGGAGCCTGGATACAAGGAAAGGTATTATGCTGAAAATTTTGGTGTATCAAATCCAGAGGAG ATTGACAAAATTAAGAAAGATATAGTAAGTTGTATACATTTTTCTGACAGTGAACCGTGCTGTAAGTTGGTCTTTAAATCTTCATCTAACCCCTTTGCCT GTGTTCCAGAGGAGGAAAGGGAGTGTGCTCATGCACTCCAACAGTATTTTGTCGTCATATGGGTTAAGAAATGTTCATCCTGTGTAAATAAAGTTCAATT TTACACCAGTGAATAATTTTTTATAGGACAAATATGTCCGCTGTTAGATCAAAATAAGCATCATATATATTCTTAGTATTGTTATATGGCTTTGTTGATT TTGAATAGGTTAATTACTTTTTGGTTCTTGTACAACAAACAAGCCTTAGTCATTGTAGTTTCACTGGATTTTTAAATACGCCCCTACGGTTCAAAAGTTT TTAATCAGGTACCTATACTTCAAATAAGTTTTGAACAAGTCCCTACCAGCACAAGTTTTAGGGACTTGATTACAAAAATTCTATAATAAGTGGGGATTCA GTTAAAAGCTTTAGACTATAGTGACTTCTTTAAAAATAGAGTGAAGGGATAGGGACCATAAGATTAATTTAACCTTGTAACTTGTAAGTATTTTGCTTTC TGGTGATAATTATCCTACTCAACGTCATTAATTTCTGGCTATTAGCCAAATAAATATTATGTTAGACGACAGCTTATTGCCTTAGTTGTCCCTGTAGGTC TTGAAGTATGTGGAAGGCCTTTGTTGGGTTTGCTGGTATTACTATCAGGGTGTCCGCTCGTGGAAATGGTACTACCCCTACCATTATGCTCCCTTTGCTT CTGATCTTAAAGATCTAAGTGATCTGGATATTACATTTTCTGAGGGAGAGCCATTCAAACCATTTGATCAGCTCATGGGTACCCTTCCTGCTTCAAGTTC GAGTGCATTGCCAGCAAAATATAGGGATTTGATGACTGACCCTTCCTCACCTATTTTTCACTTCTACCCTGCTGAGTTTGAGATCGATATGAACGGCAAA CGATTTGCATGGCAGGGTATTGCCAAGTTGCCATTCATTGATGAGAATAAATTGCTTGCCGCCACAAGGAAGCTTGAAAACACATTAACGGAGGAAGAAC AACGTCGGAATAGTGTGATGCTTGAATCTCTTTTTGTCAACCGTGCACATGGTTTGGCTCCGCAAATCTTATTGTATTACAAAGTTTGTAGTCAATCACC CCCACATGAAAGAGATGTTTGCCCTATTGACTCAAATGCTAGTGGTGGGATGAACGGATATCTTTGGTTATGCGATCCTTTACCTTTCGCAATCAATGGA TGGCAAGATATTGAGAGTAACCAAGTCTTAAATATTATATATCGTAATCCTCATAAACATAGACATAACCCAAAACCTCCTGTTGGTGTAGTAATGCCCA AAAAGTTAATAAAATCCATTGATATTAAACCTAGTCCTGTGCTATGGCATGAAGACAATTCTGGTCGGAGACAGCAAGGCAGAGAAAGGCCACAAGTACC TGGAGCAATAGTTGGCTGTCAACTGGGAGAAGCAGCTCATCGTCTTATCAAGAACGCCCTTAACATTAAACTGAATAATACATCTCATGGATTGTTGGAG CAACAACCTCCAGGCCATCATATAGGGAACAGGCTTCAATCAGCAGGACCCTCTGGACACAGAAATTATCATGGCGGACAGAATTACAGACAAAATTTTA GGATACAAGACAGGTCACAGCATCAAGAACATATCCACAATGTGAAGTCTGGGTTTTCTGATTTAACAAAGGAGGATGGAGTGAGAACTACGCCATCGAG GCCGCAAAAGTCCAGGCCAGCAACCAATCCACGACACCAATTTGAGCAGAACACAAGAAAGTATTATGGCGAGAACTCAAATGGTTATTATGGACAACAT AATCAGCAGGGCGCAGTTTTCAGACCCAAATATCCGATCTCTACTAATGGTGGACAGAATTATAGACAAAATTTTAGGATACAAGAGAGGTCAGAAGAAC AGATCCACAATGTGAAGACTGAGTTTTCTGCTTTAACAATGGAGGAAGGAGTGAGAACTAGGCCATCGAAGCCGCCAAATTCCAGACCAACAACCAATCC ACAACACCAATATGTGCAGAACATTGGTCCTCCAGTATCACCAAAGGTGATTACTAAAGCACCAATACCACCAAAGGTGATTACTAAAGCACCAATACCA CCAAAGGTGATTACTAAAGCACCAATACCACCAAAGGTGATTACTAAAGCA
• Tissue: flowers
• Gene name: LI_gene_41605;
• Additional information: details;

Expression of Ll_transcript_196462

FPKM

• FPAB: 3.8
• FPNAB: 3.1
• LF1: 3.4
• LF2: 3.8
• LF3: 4.6
• LF4: 3.4
• UF1: 1.6
• UF2: 3.8
• UF3: 4.6
• UF4: 2.5

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_196462

• Blastp: 5'-3' exoribonuclease 4 from Arabidopsis with 78.57% of identity
• Blastx: 5'-3' exoribonuclease 4 from Arabidopsis with 78.57% of identity
• Eggnog: 5'-3' exoribonuclease(COG5049)
• Kegg: Link to kegg annotations (AT1G54490)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452219.1)
• Pfam: XRN 5'-3' exonuclease N-terminus (PF03159.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;