Id Trinity | FTRINITY_DN54329_c2_g4_i1 |
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Name Transcript | Ll_transcript_195553 |
Sequence | TAGACATACTCTTCATCTTAGCCATCAATTTCTTGGAAATCCAATGGTGTAGATCTATTTATTAATTCAAACTATTGGATTTCAGAGTTCTCACTGGTCA ACATGGATATGTTTTTACATGTAACAATCTCTTCCAATTTCTTTGTCCATCAATTCTGGGTCATCATTCACCAATAGTCAGAGCAAGAACAAGAACCTTG CTTGAAACTATGAAAACGACACCGATCTCTTACAACTATTTCGCGGTTGTATATGTCGGACGCAATCTTCATAGCAGAATGACAATCTTGGCATATCCTC AGGTTCTTGAAAATATATAGTGGAGAACCTGATACAGTGCTTATTAGACCAAAAGAGAGTGCAAGCTTCTCACTATGACTGAATAATACTTGCTCTACCT CCTCCAATGCTTCTTCAGTGCAATCATCCCTCCCAGAACAACCAAATAAAACTTGAGAACTTGTGTTGGGAACATAGCCAACCGACCTCAACCGGCAAAT CATGTCATCTAGCATTACGTAAATCCTCGCAGTTTGTGGATGTGACTTATCTCCTGCACTGAACTGATGAAGTTTGCCATCAACATATATTGAGCTCATT CCTGGCACCTTTCTAATACCCCTTTTCTTAAGAATCTGCCTAAATGAATCTGCCTCGTCTACTTTTCCAGACAATGCATACATGTTCGAAAGCAGGATAT GATACTCCGTGTTGAGGGGATCTATATGAACCAACTCTCTCATGATCTGTTCACCTAGCTGCAGTTTACCATGTGTATAACAAGAACCTATAAGGGACCC GAGAACGAATTCATTCGGAGGAACTGGCATCTTTCTAACCATGACTTCAGCTTCTTCTAACCTTCCGGCACGACCGAGAAGGTCCACCATACAACCATAA TGCTCTATTTCGGGCCTTATTCCATACACAGATTCAAGCTCCTCGAAGAACTGCAAACCTTTGTCAACTAGACCTGAATGGCTGCAAGCACTTAACAAAG CCATAAAAGTCATAGCATCAGGTTTCACTTCTTGAACCATGCAAGGAAACATATAAATGGCGACTTTCCCTTTCCCATGCATTGCCAACCCACCAAGGAT AGCATTCCAGGTCACAACATTCCTCCTTGACGTATTCTTAAACACTGCCAAAGCAGCATCTATCCTCCCACATTTCGCATACATGTCAACCAAACTCGTC CCCACCATAACATCCATATCCCATCCCATCATCTTCAAACCATAACCATGAACCCATCTACCCATGCTCACATCACCGGATTGTGCACAAGCCGATAAAA CCGAACAAAGCGTCACATAGTTCAACCCAAAACCGCAACTGAAAACCATTTGTTCTAGAAGCATAAACGCTTCCTTTGTCAACCCATTTCCAACATACCC AACTAACATAACAGTCCAAGCAACCTCATTTCTCTCCGGCATTCGATCAAACAGAACCCTCCCACTTTCCACACCTTCCCATTTCACCACACCTTCCAGA ACCACGGTCCACGACACAACACTACGCTCCTCCATCTCATCAAAAACTTTTTTCACCTCACCCACCAACCCACCACACTTAACATAAACATCCATCAATG CATTACACACCCTAACACACTTCAATACCCCAATCTTCACCACACAAGCATGACACTGTCCCCCAACCTTAACATCCCCAAGCCTCGCACAAGCATTGAG TACACAAACCATGGAAACCCCATCAACGGGTAAGCCTCTTTGCCGCATTTCAGCGAACAAATTGAGTGCTTTCTGAGGGTAACCTTGACGAGAGAGGCAT TTAATGAAGGTGGTGTAGTCAACAGTGTCTTTGTGTGATTGGGGAATTTGGTCGAACAGGTAGTGGGCATAGGGGAGAGAAGAGCATGAAGAGTAGAGGT GGAGGAGGGCGTTGAGGAGGAAGGAGTTGGGGAAAGAGAGGAGGCCGGAGACGGTGGCGGCGGCGTGGAGTTGCTTGCCACGGAGGAGGGAGGAGGAAAC GGAGCATGATCGGAGAAGAGAACGAAAGTGTTGAGAAAGGGATGAAGAAGATGAGAGTAACGTCGTCCATTTCATCCAAACAGAGATTTAGAGTTGATCA AGATAATTTTCTCAAAATTCATAACTTCATATCCATGCTATTTTATACAGTGCTAATTCAAATTACGGCCGTAATATTACTGTTGCGATGATTATCATAG TAACCACGATCATTATTGTAATAACGACTATAATCACAATTTAAAATAGTGATATATATGATGTATCGAATATACGAGGTGCATGAATATTACAATCTTC GTTTTAACTATACATTGTGTGGATAATTAATATAAAAAATTTATATATACGATAATTCGGTCATTTACGGTTCAATTTTTTTAAGTTAATGATGATTAAA TATAAATTATCGATAATATAATGACAATGTGTAATAATACATACATTTTTTCTTTTAAATATTTTGTATTTTTTAGTTAATTGAGAGATACCAAACATGT TAGGAAAATAATAAATATGTTACCTAAATACAGGTATAAGACTATATCACTATACACACATACGGTAATGTATCACATGGCAAACCTTTTACTATATGAT TACAATTTCTCACAATCTGCATATTTTCAGTGAAATGATTCATATCATATAACCTTATAATGTTATTTAATCTATATAGCCTACCACATCTAGTGAGATT ACGGCTCGGATATTATTGTCGTATACTTGAGCAATGTGATGAACATTTTTGAGACCTTCTGATTAAGAATTCCTAAGCAGAATATGGAATCCTAAATGCC BLAST |
Tissue | flowers |
Gene name | LI_gene_41682; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_195553
Blastp | Pentatricopeptide repeat-containing protein At5g15340, mitochondrial from Arabidopsis with 58.21% of identity |
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Blastx | Pentatricopeptide repeat-containing protein At5g15340, mitochondrial from Arabidopsis with 58.62% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT5G15340) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019442686.1) |
Pfam | PPR repeat family (PF13041.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |