| Id Trinity | FTRINITY_DN54357_c0_g1_i15 |
|---|---|
| Name Transcript | Ll_transcript_197816 |
| Sequence | AAATAATAATAATCAATGAGTGGGATAGGGAAGAAAAGCTGAAAAACCAACAAAAGAAACAGTGTGAATCTGAATCCGTACCTCGTAGTTTGCATTATGA AATTTTGTTATCCTTTTGGTTTCTGATCGGATAGTTTTTCCATTCACTTTGTGGTCTCCATGGCCATCACCATCCAAACCTTGGAAGACAGGTATATTGC TTCTTGCAGGAGACACGGTATTTTGCCTAATACTACTATTTTGGCAAGCTTTTTCAAGTACACATGGACAAGAGAGTCATACTTACACCAAACTTTGGTC TTAACCAATTTTCCATTGTATTATGCAGCATGCACTTTTTTCCTTTTACTCCGTTTGTTCATGCAGTTACTTTCCTCGCACAGAGGGCAGTGATTTTATT CCATTTTCTACTTTACCCTTTTCATGAGTGTAAGATGCTAAATCTGACCATGACCATGCAGGCTGAGATCAAAAAGTCCTGCAAAGAGCTGTGTAGTCTG GAGATTTTTATTGATGACCTTAAGGATATTGATTGTGCTCCACTTCTTGACGTATGCATGAACCTTGATGCTTCTGAAATTGAAGCTGTTGACATACGTA ATGAATCAGCATGTGCATTAAATGGAGAATATGCATTGCCATTGATGCATGCTATTAACCAAAAGCTTCGAGTAGTTGACCTACAGGATCTGTCATTTGG AAAAGACTTCTTACGGGATATCTCAGAGAGAGGTTTAGCATGCCAAGTTTTGATATTGAGGTCTTCACATTTCCGGAAGCTGAATTTGACTGGGAAGTTC ATGCAGATGCACACCCTTGATCTTGATTTTAGTTCATCTCTTACCAGTTTCCAGGAGGACTGCTTTAATTGCATGCCCAATCTAATGCGCCTCTCAATGT GCGAGACACGGATTACCAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTCCCTTCTTTGGTTGAACTAAGGTTTCAATATTGGCAATGCTGCAATGA TGCTGGGACATCTTTTATCTCACCCAGTAGGAAGTCTGATAGCAGTGTTGATCTTGACCTGCTTAATAGAGTTCCTTTTACTGGTGAATCTTTCACTGAT TCAAGGGTACCGACAGATCCTAACTTCAGTGCAGAAGATCCATTGATAAATCTGTATTCCTTTAATGAAGAAGTTATAAATCATGATGTTCAAAGCATGG ATGAGGATTCATCAGATGATAGTGAAGTTGACTTCACGAGTCATCGTCATAGATTCTGGCTGTCAGATGTGTTTCCTGGGTGGAATTTTCAAGTGCCTAT TCAGAACGAGAATGAAGATGGAGAAGATTCATCTCAAGGCCACTTTACAGGGCATACCACTGATGTTTCTATGAAGTATATGTCTTGTCATGCATCACCA ATATGCTATGAGAAGCATTACAGAGAGTTCATGATAGCTTCATTATCAAATCTGAAAGTTTTAGATAATTTGACGATCAGAAATAATGACAGGGAAAGGG CTTCTGGAATATATTCTCAATACTTTCAATATCTTCCATATGGATGGAAGCAAAAAGAGAGTGTGGTAAATATCCTACGTAAGCGAGAAATAAAATCAGG CCACATTAAGGTGCGAACTTCCAAGTGTAGACCGTTGAATCCTTCTGGAGAGTCCAAATACTTTTATACCAGGTCTCTATCTGCTGCTAAAATGGGGTCT TCAACTTGGCCTTCCTTGCACCCCCTTTCTCTATCAGGTTGTGAATTAGAAAGGGGCTTTCGTCCAAGGCAGTTTGAGTACCATCCATCTGACTCTAGCT TGATGGTCCTTGGAACTCTAGATGGTGAAGTAATTGTTATCAACCATGAGAATGAACATATTGTGAGTTATATCCCATCACTTGGAGCAATGAATAGTGT CTTGGGTCTCTGTTGGCTCAAACAATATCCCTCCAAGCTTATAGCAGGTTCAGACAATGGTTCCCTGAAATTGTATGACATCCACCATATACCAAGAAAA AATACTCGCACACATTGGAATTCTGGTTGTGTTACCTTCGATGAGTTTGACCAGTTGACATCTGTTCATGTTAACTCTACGGATGAATTATTTCTTGCAA GTGGGTACTCAAGAAATGTTGCTTTGTATGACATCAACAATGGGAAGCGCTTACAAGTGTTCACAGATATGCATTCTGGGCATATTAATGTAGTCAAATT TGCAAATCATTCCCCGTCAATTTTTGCCACTTCTTCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAAAAACCAATATATCCTTGCTTCACTAAT TCAAGTTCAAAAGGAAATGTGATGGTTTGCTTTTCTCCAGATGACCGATATATTCTAGCATCGGCAGTTGATAATGAGGTTAAACAGATCTCGGCTGCTG ATGGTAGGCTTCACTTGGTTTTTGATATAGCTCCCACTGGAAGTTCTCAGAACTACACCCGTTCTTATTACATGAATGGGAGGGACTACATTATTAGTGG GAGTTGTGATGAACATGTTGTTCGTATTTGCTGTGCTCAAACTGGAAGACGCCTAAGAGATGTATCCCTTGAGGGAAAAAGCTTAGGAAGTTCTATGTTT GTTCAATCTCTGAGGGGTGATCCTTTTCGGGTAATCTTTATTTTTTATTGGACACCTTATTTTTTTCTGTCCATTTTTTCTTTGTAAGAGGGTGAGTGTC GGCACAACAGTAAGGTTTTTGCTTAGTGACTAAGGTCAGGAGTTCAAATCTTGAAAATAACCTCTTTGCTTGGTGGTAAGGCTGCGTACTTTTATTTTAT TTTTATTGTCTTTGCATTTATATTTTAATTTCTGCCTACTCAGGTGGACTGTTTCTGCTGTCTTGGCTTTGCCATATTCTCACATAGCATTTATGTGATA TGTCAAACGTCTACACTTTTTTGTACCTTTTTTTGTGTATTTTTGTCTTCATAACTGGAGATACCTGACACTTGCTGATTCTTATGGTTATGCCAAAGTG ACTTTGATATGCTTGGTGTCACAACACAAATCACTCATAATATATGACCCCTTTTTCTCGTCTCTCTTGTGTATAACCATTTATAACGTGTCCTGAAATG TGATTGACATCTTTGTTTCCTTAGAATCCATTCATGGCATGAAAAATGAAATTGCTGCCAATTGGTATATGCATGTAAACTACTGTTGAACTGGACGTAA TTTAAGGTAATTGTGTGGATGAGATACACATTGTGAATGTTCTGATGGAAAGCAGGAAATAGTATTTATACTTTTATCCTTATTAAGAAACTCATTTCTT CCCTTAAAATAAAAAGAAACTCATTTCTTCAATATAGTGAATTTCTATTCTCTTTCCCTTGTTATTATGATTTGGATATTGTAAAATGGTGTTTTTTTAT ATGAATTTCAAATGATGTATGCAGGATTTCAATATGAGCGTATTAGCAGCCTACATGCGTCCTGGCTCCAAGTCTGAAATTGTCAAGATTAACTTACTAG CATCTAGTGGCCATGCCAATGATGATCCTGATGAGGAGCGCCACCGCCCATCCCACAGTCTGGGAGCTTGATATAAGATTATATATGTACCATACAGTAT GTATAGGTGAATTTCAATTGCTGTTTTGGAGAATTATAATTATAATTTTTTTTGTATTAAAAAGCTGTTTAGTTCAGCTTTGCCTTCAAGTAGGTAATTT AATAATACAACGAGTGTAGATAAAGGAAAACATCTGTAATAATTCTATATTATTATATTTGCCTTGATCACACACCATTTGGTGTAAAAATTGTGTCCTA GTTCGATTCAGTTGTAGTTCTTTAAATTACTTGAGTCAAGGTCCTGCTGGGAATAATTTTAACTTATAAGGTGAAAAAGGGAAGGATATTAGCCGCTCTT TCTAATTTAACTCCAAAGAAATAAGAGAATTCTAATTTAACTCCAAAGAAATAAGAGAATTCTTGCACAACACATGGGGTTAGTAACAAAATAACAACAC ACGTGAAATGTATCTAAAGAGGGGACAATAACAAAGCACATAGGGACAAAGGGGTAGGAAGGCACCAGAAACCTTCGTGGTTGCTGAAAACTAATGGGAT AAGTGCATGAACCATTACATGTTGTCTCTTCTTGGCTGGTACAAGCCACCGACTCTACCCATAGTTTATTCTAACGCCCATGGAACTCAGATTGATCCTT CTGGCTTACATTTTATTTTATTACTATCACCAACTTTGTTAAGGCAATTCCATAGATATCACCAACTTTGTTATTGCTTTTCCCAATTTGCCACCATTTT ACAAAGTCCATCATTATATATATGCCATCACAAACCCTATCACCCAATATTAGCAAAACATACAACAATGAAGCCTGTCTTTACCACACTGCTGTTTTGT TCCCTTCTTTTAAGCTTCTCTTTCTTGGAGTCAGCCATAGCATATGAAGATGCATCCTTTTGCAGCAAGAAATGCTCTGCTAGGTGCTCTGTTGCAGGAG TTCAGGATAGGTGCTTGAAGTACTGTGGAATATGCTGCGCAGAGTGCAAGTGTGTTCCTTCTGGGACTTATGGGAACAAGCACGAATGCCCTTGTTACAG GGACAAAGTTAACAAAAAGGGCAAGCCCAAATGCCCTTGAACTCAAATGAAGACCAAGCCTGAAGCCCCCACTCAGAATAAGAGAAGTGTGTTTTGTGAT AGTAATTGAGAAATTTTAGCAGAGTTGGTTCAACTTATTGTTTCCATTAGTGGTTCCTAAGTAATGTTAGATCATTGTTAGTACTTAGTATGCCCATGTC TGTTGAATGTTAGTACTAGACTTGAGGAATAAATTTGTTGTAGTGTTGTTTTTTTTCTCATTTTCTCTGACTTGCTTATAAAACAAACAATATTTTATGA ACATGATTCTCTTTTATGCCTAGGATTCTTCTGTATAATTCCTACTTCAAAATCTAAAGCAATGTGATGTGTCGCATGTCACTGTTATAAATCTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_41913; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_197816
| Blastp | Katanin p80 WD40 repeat-containing subunit B1 from Strongylocentrotus with 25.37% of identity |
|---|---|
| Blastx | Snakin-1 from Solanum with 80.65% of identity |
| Eggnog | Katanin p80 (WD repeat containing) subunit B 1(ENOG410XQAC) |
| Kegg | Link to kegg annotations (373369) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428185.1) |
| Pfam | WD domain, G-beta repeat (PF00400.31) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |