| Id Trinity | FTRINITY_DN54377_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_195881 |
| Sequence | ATGGTTATGTGGTGTTTCGCCGCATGGAAACCACTTTCAAGTTCCAACTTATTCCCGAAGCGCGCCAAATCAACGACGAACCATCTCCCTCACTCTCTTA AACCACCATCGCCGGCGCTGCAGCGCCACCACCACCACCACCACCACCACCACCACCACCACGATAACAACCATGGGAAAACAAAAGCAACTAGTCATTT CCCGTTTTTTCGCACCCAAATCCCAAACCCCTCCTTCAGCCACCGCTTCCTCTAACCCCAATCCTCCAACTCCCAAAAAAATCACCGCCACCGTTACTTT CTCTCCATCCAAACGCGCCCTAACTTCTCAACTAACTCCCTCTCCCAAACCACCCAAATTCCCCAAACTACCCTCTCAACCCGACCCTTCTCTCCACCAG CGCTTCCTCCACAAGCTTCTAGAACCTTCCACCGACCCTCCACAAACCCACCACCCTTCCACGCCGTTCAAATACACTCCGTTACAGCAACAAGTAGTGG AACTCAAACGTAACTACCCTGACGTTCTCTTAATGGTTGAAGTTGGTTATAGATACCGTTTTTTCGGCCAAGATGCTGAAAATGCTGCTAAGGTTTTAGG TATATATTCTCACATGGATCATGATTTTTTAACCGCTAGCATACCGACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTTAACGCTGGATATAAAGTT GGTGTGGTTAAGCAGACTGAGACTGCAGCCATTAAGGCTCACGGTTCGAACCGGTTAGGTCCGTTTTGTCGAGGATTGTCTGCCTTGTACACCAAGGCTA CATTAGAGGCGGCGCTGGATATAGGGGGAGCGGAAGAAGGGTGCGGTGGAGAGAGTAATTACTTGATGTGTGTTGTGGAGAAGAGTGTTTTGAGAGAGAA ATTGAATTGTGCAGTGGACAGTGGTTTTGATGTGAGCATTGGATTTGTTGCTGTGGAGATATCAACAGGGGATGTGGTTTATGGAGAGTTCAATGATAAT TTTCTAAGGAGCGCACTTGAATCTGTGGTTTTGAGCTTGTCTCCTGCTGAATTGCTTCTTGGGGACCCTCTTTCCAAGGAAACAGAGAAGTTATTGCTGG CTTTTGCTGGACCTGCTTCAAATGTTCGCGTGGAGCGAGCCTCACAAGATTGCTTCGCTAATAGAGGTGCTCTCGCTGATGTTATGACCTTGTTTGAGAA CATGGATGCAGACAGTCCATCAGATTCAATGAAAAGTAATGATTTGGCTGAGTGCAGAAGTCAGCAGTTGGTAGTTAAGGACATTATGAACATGCCAGAT TTGGCTGTCCAAGCTTTGGCCTTAACTATTCGGCATTTAAAGGAATTTGGTTTTGAAAGTACTCTACGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAGCA ATATGGAAATGACCCTCTCAGCCAATGCACTTCAACAATTGGAGGTTTTAAAGAATAGCAATGATGGATCCGAGAGTGGTTCCTTGCTGCGGATTATGAA TCATACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCACTGGGTATCTCACCCATTGTGTGACAGAGTCTTGATTTCTGCTCGTCTTCATGCTGTATCT GAAATCGCAGAGTCCATGGGATCTTGTAATGGTACGAAGAATATTGGATATGAGGAGGAAGAAGATGATGTAACAGCTGTACGCCCTGAGTTAGCTTACA TACTGTCGTTGGTTTTGACAACTCTGGGTTGCAAACCTGATATACAGCGTGGGATTACAAGAATTTTCCATCGCACTGCTACCCCATCTGAGTTTGTTAC AGTTATTCAAGCTATTTTGTCTGCCGGAAAACAGCTTCAGCAGCTTAACATAGCAGAGGACGATAATAATACATTGCACTCTAATCTGTTGAAAAAGTTA ATTTTGACTGCTACCTCTGCCAGTGTTATTGGTAATGCTGCAAAAATGTTGTCATCTTTAAACACAGACTCTGCTGATCCAGGTGATCTAACAAATTTGA TCGTTGCATCTGAGGGACAATTTCCAGAGGTTGTTACAGCTCGGAAGAATTTTCAGATGGCGGAGGAACAATTAGAATCGCTGATTACATTGTATCGCAA ACAGTTTGGAATGCGAAGTTTGGAATTCATGACTGTTTCTGGAACAACTCATTTGATAGAGTTTTCCACTGAAGTAAAGGTGCCATTAAACTGGGTCAAG GTAAATAGCACAAAGAAAACAATACGGTATCACCCTCCTGAAGTAGTGGTAGCATTAGACAAGTTATCATTAGCAAAAGAGGAGCTTACTGTTGCCTGCC GAGTTGCTTGGGATAGCTTTCTAAGGGACTACAGTAAACACTATCCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACT TGCCATTCTTTCAACAAATAAGGGATATGTCTGTCCTGTATTTGTAGGTGATAACGAGCCTGTTCAGATACAAATTTGTTCTGGTCGACATCCGGTTTTG GAGACTATCTTACAAGACAATTTTGTCCCAAATGATACGTATATGCATGCAGACAGAGAGTACTGTCAGATTATTACTGGGCCGAATATGGGGGGTAAAA GTTGCTATATTCGCCAGGTGGCTTTGATCGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGATGGGATCTA CACCCGAATGGGTGCTTCAGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTTCATAACTGCACAGGACAT TCACTGGTTATCATTGATGAGCTTGGGAGAGGTACTAGTACACATGATGGTATGGCCATTGCATATGCGACATTGCATTATCTTCTAAAGCAAAAAAGAA GCATGGTCCTCTTTGTCACTCACTATCCAAAGATTGCCGACCTCAGAACTGAATTTCCAGACTCGGTAGGAGCATATTATGTGTCCCATCTGACCGCATA CGATGATACAAGTAGAACCTCCAACTTGGATAATGAAGATATCACTTATCTATACAAGCTTGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTG GCCCAGCTTGCACAGCTACCACCACATTGCATTAGTCGAGCCATTGTCATGGCTTCCAAATTAGAAGCACTGGTAAACAGTAGAATACAAAGTAGATCGG GAAGGGAGCTACTGTTGGATGCATTGGTAACTGATCAAGAGCAAGAACCACATCAGCTCTCGTCTCAACCACAGGAATGTCCAAGTCAAGAATTTGATAG CGCTTGCAAGGAATTCTATTCATACTTAAAAGCTGCAACTCTAGATGATGATGATGATGATGACGACCATGCAAAAAGCTTTCAACTTTTGGAGCATGCT AGAAGCATTGCAGAGAAATTAATTGCAGATGAAGGCAATTATTATAAGTGAGATAAATGACATGTATCATAAACATGCAGAAGCAGGGGTTAAGAAGGTC TCCAGTGTTGTAGATAATATTTTGCATCCCAATTTTGTTGTTTTCAATTTGGTTAGGCCTTCTAGTTCCTAGCTGTATATATTTTTGTGATTTTGGTTAT ATGCTTGGGAAACTTATTGTGCTGTGCATGGCTGTTCTAATTTTGGCCAATGAGAGTTTTACTGTGGTGATATGTCCGAATTAGTTAGTCGGTCTCTTTT TAGTTATCGATTGACAATGATATTTTATACAATGTGGGACTTCTTCATTCACACTTGGAATATGGTTAATGTTTTCCAAAGTGTGGAGTAGATGTGAAGT CAGAATCCCACTCAATACTAGGAATAGAATCATGTGTAACCAAGAACTAAGTATTTACTTAAATATATGTTTTGTTTTTTTGTCGAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_42051; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_195881
| Blastp | DNA mismatch repair protein MSH3 from Arabidopsis with 60.63% of identity |
|---|---|
| Blastx | DNA mismatch repair protein MSH3 from Arabidopsis with 60.13% of identity |
| Eggnog | that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249) |
| Kegg | Link to kegg annotations (AT4G25540) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019442140.1) |
| Pfam | MutS domain I (PF01624.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |