Ll_transcript_195882

• Id Trinity: FTRINITY_DN54377_c0_g1_i2
• Name Transcript: Ll_transcript_195882
• Sequence: ATGGTTATGTGGTGTTTCGCCGCATGGAAACCACTTTCAAGTTCCAACTTATTCCCGAAGCGCGCCAAATCAACGACGAACCATCTCCCTCACTCTCTTA AACCACCATCGCCGGCGCTGCAGCGCCACCACCACCACCACCACCACCACCACGATAACAACCATGGGAAAACAAAAGCAACTAGTCATTTCCCGTTTTT TCGCACCCAAATCCCAAACCCCTCCTTCAGCCACCGCTTCCTCTAACCCCAATCCTCCAACTCCCAAAAAAATCACCGCCACCGTTACTTTCTCTCCATC CAAACGCGCCCTAACTTCTCAACTAACTCCCTCTCCCAAACCACCCAAATTCCCCAAACTACCCTCTCAACCCGACCCTTCTCTCCACCAGCGCTTCCTC CACAAGCTTCTAGAACCTTCCACCGACCCTCCACAAACCCACCACCCTTCCACGCCGTTCAAATACACTCCGTTACAGCAACAAGTAGTGGAACTCAAAC GTAACTACCCTGACGTTCTCTTAATGGTTGAAGTTGGTTATAGATACCGTTTTTTCGGCCAAGATGCTGAAAATGCTGCTAAGGTTTTAGGTATATATTC TCACATGGATCATGATTTTTTAACCGCTAGCATACCGACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTTAACGCTGGATATAAAGTTGGTGTGGTT AAGCAGACTGAGACTGCAGCCATTAAGGCTCACGGTTCGAACCGGTTAGGTCCGTTTTGTCGAGGATTGTCTGCCTTGTACACCAAGGCTACATTAGAGG CGGCGCTGGATATAGGGGGAGCGGAAGAAGGGTGCGGTGGAGAGAGTAATTACTTGATGTGTGTTGTGGAGAAGAGTGTTTTGAGAGAGAAATTGAATTG TGCAGTGGACAGTGGTTTTGATGTGAGCATTGGATTTGTTGCTGTGGAGATATCAACAGGGGATGTGGTTTATGGAGAGTTCAATGATAATTTTCTAAGG AGCGCACTTGAATCTGTGGTTTTGAGCTTGTCTCCTGCTGAATTGCTTCTTGGGGACCCTCTTTCCAAGGAAACAGAGAAGTTATTGCTGGCTTTTGCTG GACCTGCTTCAAATGTTCGCGTGGAGCGAGCCTCACAAGATTGCTTCGCTAATAGAGGTGCTCTCGCTGATGTTATGACCTTGTTTGAGAACATGGATGC AGACAGTCCATCAGATTCAATGAAAAGTAATGATTTGGCTGAGTGCAGAAGTCAGCAGTTGGTAGTTAAGGACATTATGAACATGCCAGATTTGGCTGTC CAAGCTTTGGCCTTAACTATTCGGCATTTAAAGGAATTTGGTTTTGAAAGTACTCTACGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAGCAATATGGAAA TGACCCTCTCAGCCAATGCACTTCAACAATTGGAGGTTTTAAAGAATAGCAATGATGGATCCGAGAGTGGTTCCTTGCTGCGGATTATGAATCATACTCT TACTATATTTGGTTCCAGGCTTCTTAGGCACTGGGTATCTCACCCATTGTGTGACAGAGTCTTGATTTCTGCTCGTCTTCATGCTGTATCTGAAATCGCA GAGTCCATGGGATCTTGTAATGGTACGAAGAATATTGGATATGAGGAGGAAGAAGATGATGTAACAGCTGTACGCCCTGAGTTAGCTTACATACTGTCGT TGGTTTTGACAACTCTGGGTTGCAAACCTGATATACAGCGTGGGATTACAAGAATTTTCCATCGCACTGCTACCCCATCTGAGTTTGTTACAGTTATTCA AGCTATTTTGTCTGCCGGAAAACAGCTTCAGCAGCTTAACATAGCAGAGGACGATAATAATACATTGCACTCTAATCTGTTGAAAAAGTTAATTTTGACT GCTACCTCTGCCAGTGTTATTGGTAATGCTGCAAAAATGTTGTCATCTTTAAACACAGACTCTGCTGATCCAGGTGATCTAACAAATTTGATCGTTGCAT CTGAGGGACAATTTCCAGAGGTTGTTACAGCTCGGAAGAATTTTCAGATGGCGGAGGAACAATTAGAATCGCTGATTACATTGTATCGCAAACAGTTTGG AATGCGAAGTTTGGAATTCATGACTGTTTCTGGAACAACTCATTTGATAGAGTTTTCCACTGAAGTAAAGGTGCCATTAAACTGGGTCAAGGTAAATAGC ACAAAGAAAACAATACGGTATCACCCTCCTGAAGTAGTGGTAGCATTAGACAAGTTATCATTAGCAAAAGAGGAGCTTACTGTTGCCTGCCGAGTTGCTT GGGATAGCTTTCTAAGGGACTACAGTAAACACTATCCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCT TTCAACAAATAAGGGATATGTCTGTCCTGTATTTGTAGGTGATAACGAGCCTGTTCAGATACAAATTTGTTCTGGTCGACATCCGGTTTTGGAGACTATC TTACAAGACAATTTTGTCCCAAATGATACGTATATGCATGCAGACAGAGAGTACTGTCAGATTATTACTGGGCCGAATATGGGGGGTAAAAGTTGCTATA TTCGCCAGGTGGCTTTGATCGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGATGGGATCTACACCCGAAT GGGTGCTTCAGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTTCATAACTGCACAGGACATTCACTGGTT ATCATTGATGAGCTTGGGAGAGGTACTAGTACACATGATGGTATGGCCATTGCATATGCGACATTGCATTATCTTCTAAAGCAAAAAAGAAGCATGGTCC TCTTTGTCACTCACTATCCAAAGATTGCCGACCTCAGAACTGAATTTCCAGACTCGGTAGGAGCATATTATGTGTCCCATCTGACCGCATACGATGATAC AAGTAGAACCTCCAACTTGGATAATGAAGATATCACTTATCTATACAAGCTTGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTGGCCCAGCTT GCACAGCTACCACCACATTGCATTAGTCGAGCCATTGTCATGGCTTCCAAATTAGAAGCACTGGTAAACAGTAGAATACAAAGTAGATCGGGAAGGGAGC TACTGTTGGATGCATTGGTAACTGATCAAGAGCAAGAACCACATCAGCTCTCGTCTCAACCACAGGAATGTCCAAGTCAAGAATTTGATAGCGCTTGCAA GGAATTCTATTCATACTTAAAAGCTGCAACTCTAGATGATGATGATGATGATGACGACCATGCAAAAAGCTTTCAACTTTTGGAGCATGCTAGAAGCATT GCAGAGAAATTAATTGCAGATGAAGGCAATTATTATAAGTGAGATAAATGACATGTATCATAAACATGCAGAAGCAGGGGTTAAGAAGGTCTCCAGTGTT GTAGATAATATTTTGCATCCCAATTTTGTTGTTTTCAATTTGGTTAGGCCTTCTAGTTCCTAGCTGTATATATTTTTGTGATTTTGGTTATATGCTTGGG AAACTTATTGTGCTGTGCATGGCTGTTCTAATTTTGGCCAATGAGAGTTTTACTGTGGTGATATGTCCGAATTAGTTAGTCGGTCTCTTTTTAGTTATCG ATTGACAATGATATTTTATACAATGTGGGACTTCTTCATTCACACTTGGAATATGGTTAATGTTTTCCAAAGTGTGGAGTAGATGTGAAGTCAGAATCCC ACTCAATACTAGGAATAGAATCATGTGTAACCAAGAACTAAGTATTTACTTAAATATATGTTTTGTTTTTTTGTCGAC
• Tissue: flowers
• Gene name: LI_gene_42051;
• Additional information: details;

Expression of Ll_transcript_195882

FPKM

• FPAB: 0.3
• FPNAB: 0.3
• LF1: 0.4
• LF2: 0.3
• LF3: 0
• LF4: 0.5
• UF1: 0.3
• UF2: 0.4
• UF3: 0.7
• UF4: 0.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_195882

• Blastp: DNA mismatch repair protein MSH3 from Arabidopsis with 60.63% of identity
• Blastx: DNA mismatch repair protein MSH3 from Arabidopsis with 60.13% of identity
• Eggnog: that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
• Kegg: Link to kegg annotations (AT4G25540)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442140.1)
• Pfam: MutS domain I (PF01624.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;