| Id Trinity | FTRINITY_DN54416_c3_g1_i19 |
|---|---|
| Name Transcript | Ll_transcript_237294 |
| Sequence | ATGAAACCATGAAAACCTTATCGGATTGGTGCTAAAGGAATCAGAATTCAATTTCATCATCTTACTACTTTTGTATTCATCAATTTTCTTAGAACCTAAT TCCCCTTTTAATCATCTCCACACATTTATGAATTTGCCACAACGATGAATATTCTCTCTCCACCCCAACTTCACATAAACAAACCCTACCATTTCACCCA TCCCCATGGAACATTCAAGAAGCAATTCCATTCCAATCGTAACAGGAATGTTCTTCAACGCAGTTCACCATTCACAGTGCTATGCAACTCAAAACCCAAT GAAGATGATTTTGTGAGCAGGGTTTTGAAGGAGAACCCAAGCCAAGTGCAACCCAAGTTTCTAATTGGTGAAAAGTTCTATAATTTGAAAGAAAAACAGG ATTTTGGTAAAAAATCCAATGTGGGTATTTTTGATGTGTTGAAGAGGTTGAAGCCTCTGAGAAAGAGTGATAATGTGGAACAAAACAAGGACTTGGAAGA GAAGAAAGATTCTGTTTACTTGAAAGACTTGCTTAAAGAGTACAGAGGGAATCTTTATGTGCCGGAGCATATTTTCGGCACGAAATTGTCTGAAGAGGAA GAGTTTGATAAGAATCTAGACTCTTGTCCGAAAATGAGCATTGAGGAGTTTCTAAAGGCTTTGAGTAAAGACAAAATTAAGTTAATAACTTCAAAAGGAG ATAATGGGAGTTACTTTAGGGATTTTATTGTAGAGTTGAAGGAAATCCCGGGTGATAAAAGTTTGCATACAACTAAATGGGTTCTCAGGTTGGATAAAAA TGAAGCTCAAGCAATTTTGGAGGACTACACCGGGCCGCGATATGAGATAGAGAGGCACACTACGTCTTGGGTGGGAAAAATGCCAGAGTACCCTCATCCG GTTGCATCTTCCATATCTAGCAAAGTGATGGTTGAGCTAGCAGTAGTCACATTTTTTGTGGCTTCTGCAGCAATTCTAGTTGGTGGTTTCCTTGCAGCAG CAGTATTTGCTGCTACCAGTTTAATATTTGTGGCAACTGTATATGTCGCATGGCCTATAGCCAAACCATTTCTTAAGATTTTCCTTGGCATTGCTTTAGC AATTTTGGAGAGGATTTGGGATCATCTTGTTGATTTTTTCAGTGATGGTGGCATTTTCTCTAAGATATATGAGATTTACACTTTTGGTGGTATATCTTCC AGCCTCAAGGCATTGAGACCAATTATGCTTGTTGTTCTGACTATGGTACTTCTTGTTCGCTTCACTCTTTCAAGAAGACCTAAGAACTTCAGGAAGTGGG ATATCTGGCAGGGAATAGACTTCTCACGGTCAAAAGCTGAAGCTCGTGTTGATGGTTCAACTGGAGTTAAGTTTTGTGATGTTGCTGGAATTGATGAGGC AGTCGAGGAACTTCAAGAGTTGGTGAAATACCTAAAAACTCCTGAGCTATTTGATAAGATGGGGATCAAACCTCCACATGGTGTTCTTCTGGAGGGTCCT CCTGGATGTGGCAAGACCTTGGTAGCCAAGGCTATAGCTGGTGAAGCTGGTGTTCCATTTTACCAAATGGCTGGATCAGAATTTGTGGAAGTTTTAGTTG GTGTTGGTTCTGCACGTATTAGGGATTTATTTAAAAGAGCCAAGGTGATTCTACTTCTCTTTCTAAAGCATTTAATTGTTAAATATTGTACTGCTGCTAA TGTGACCAGGTTCTTGAATCATGCTTTCACACCCCTTGATGTAAAGTTAACCTCAAAAGCATTGCGTGCTACTGATTGTTCTGACGTCACAGTCGTTCAG TTTATGTGAACGGTGATGTGGCTAGATAAGGGTATTCATCACTCTAAGAAAAAGTATATGTCCGTTTTTTTTGCATTATGTAGTCAAATCTATTGTCCAT GACAATAGCAGCTGCATTTTCTGTTATATATGCTTCCTTTGTTTGATCAGCATCACAATAGCTTAATGAAAATTACTCAGCTTTTATGTGTTTCAATTCC TTCTCTAGATGTAGAAATAATGCCCGGTCTGGTATTCATTATTGTTGGGTAAGTTCATTACATTTGGTTTGCTTGTTGTGAAGATGGACAGATGATTTGT CTCATGAGGAAGTAAGATATTGTTCATCATGAGATATAACTAAGTGAAGGGATTCTTTCTTTCATTTAAAAGTTTTAAAATGATGTAGATTATAGAGTTT CTGTGTTTGTATGCTTTGAAGATATCTTGATTGGTGGGTACTCAAATTTTGTTTCTCTTTGCAGGTAAACAGACCATCAGTTATATTCATAGATGAAATT GATGCATTGGCAACTAGGTATGGCAGTATGGGTTTATGTTATGACAAATTTTAGAAATTATAGAATTGTCTTTGTCCATTGCATGTCCAAATGTTTAATA GAGAGAATGACTTCGTGATGTCCACATTATTCAACCTTACGCCAAATAGAGTAAGTAATTACCTTGAATCATAAAAGTAGACCAAACTTTATGTTAAACC CACTGGTCATTGAGTTTCCTTATAGATCTGTCTATATGTAATTATAAGTGCCTCTATATTTCATGCATTGTCGATCAATTGGTTGGTCTAATTTAGTACT CTATTACTTACATATGCTGTCGTAACAAATGAGACTGGATACGGACATTAGGTTTGTTTTGTGGAGATTTTGTTAAGTCCGAGCTAACAGACATTGCCAC ATTTAATATTTATCGGTATGGGGTACTCTTGGGAAGTTCACTTGCAGTAAACTATTGAAGATGACATAGTCTATAGGCGTCAAGGTATTTTCAAGGACTC CGAAGATGAAATGTATAATGCAGCCACCCAGGAAAGAGAAACAACATTGAACCAATTGTTGATAGAGCTTGATGGTTTTGATACTGGAAAGGGTGTTATA TTTCTAGCCGCCACGAATCGAAGAGATTTATTGGATCCTGCACTTCTTCGTCCAGGTCGCTTTGATCGCAAGATCAGGATTCGCCCTCCAAGTGCAAAAG GAAGACATGATATTTTGAAAATTCATGCTAGCAAAGTAAAAATGTCGGAGACTGTTGATTTATCCAGCTATGCACAGAATCTTCCAGGCTGGAGTGGAGC AAGATTGGCACAATTGGTCCAAGAGGCTGCTCTTGTTGCTGTCAGGAAACGGCATAACTCAATTCTTCAGTCAGATATGGATGATGCAGTTGACAGACTT ACAATCGGACCTAAACGTGTTGGAATAGAATTAGGTTATCAAGGACAGTGTCGTAGAGCTACTACTGAAGTGGGAGTTGCAATAACGTATCATCTTCTCC GGCGATATGAAAATGCGATAGTAGAACGCTGTGATCGTATCTCAATAGTACCTCGTGGTCAGGTCCTTGTTCAGCTTCCTTCACTATATTATCCTTTACT TTCGTCCGCAAATGTTTTATCAACCTTCCCTATTCTCATGTTTGAGACATTGACAATATGCGTTTCAGAAACGAATAAGGGATATATCTGGTACACCTGC AACACAATTTCATTACTGTAACACGGGAGAATTTGGTACAGAAAAGTATGAAAATTCAAGCAAGTGAATTAGAACGGAGATAAATAGCAGGAACGATTTG CAGAGTTACACGTGATATATGGAAAGTTGTGATAATTTATTTATTGGTAAAAGATGTAGATCTAGATAGGGAAGAAGGAAAAGGCCATATGGAGCCTATC CAAAATATATGCTAGTTAAGGGCTATTTGTTTGGTTCTATAGTTTTTACCGACAAAACGTTAAATAGCTGAATGATTTACATGTTCCTAATGGTCTCGCA GACATTATCTCAAGTGGTGTTTCATCGACTTGATGATGAATCATATATGTTTGAACGTCGACCACAGTTGCTGCATCGTCTTCAGGTTCTGCTTGGAGGT AGAGCTGCCGAGGAGGTCATCTATGGACGTGATACGTCAAAAGCCTCAGTTGATTACCTTGCGGATGCTTCCTGGCTTGCTCGCAAAATATTAACCATAT GGAATTTGGAGAATCCGATGGTCATACATGGAGAACCACCACCTTGGAGGAAGAATGTTAGATTTGTTGGACCAAGGCTTGATTTTGAAGGGTCCCTTTA TGATGACTACAACTTGATTGAACCCCCGCTGAACTTTAAGATGGATGATGAGGTTGCACAAAGGACTGAAGAGCTGATACGTGACATGTACGGAAAGACG GTGTCTCTCCTTAGAACACACCATGCAGCTTTGCTCAAAGCCGTAAAGGTTCTTCTCAATCAGACGGAGATCAGTGGTGAGGAAATCGACATAGTTTTGA ACAACTACCCTCCACAAACACCTTTACATCTTTTGGACGAGGAAGAAGATCCTGGAAGCCTTCCGTTCATCGCGGAACCGGTGCGCGATTTGGAGTATGC ATTACAAACTCAATCAAAGGAAGAAACCACTTGAGTTCTTTCTCAAACCACTTGAGTACATATATGCATGATGGGCTTCATTCAAAGCTTACATTTTCAG TCTGTCAAAACAAAAGTTTACATTTTCAGTGAAGTTATGGTATCATGTTGAGCTATAATTTTTGTTCATGTAATTCAAGTTAAGCAAGTTTCTTTGATAC CATGCTTTATTGGCATATTTTGTCACTCTTATCATAAGAGTCTTATGTTAATGTTTGCTTGTTTTGATGAAATATATGAAGACATCGAGAGTCATAAGGT GGCCTGGTGATGAAGATAGTGGTCTTAAGGACTGAAGTGCAGAAGGTTGTGGATTCGAATCCCACCATCAGTAAAATGGGAGTTATAAGGTGATTTGATA GGTGAAGGAGATTGAAGTGGTGTCTTACCCACAATAAAAATACTAACATACTAACAAATTTACATTCCAAAAAATTGCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_42417; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_237294
| Blastp | Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic from Arabidopsis with 65.79% of identity |
|---|---|
| Blastx | Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic from Arabidopsis with 63.38% of identity |
| Eggnog | Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465) |
| Kegg | Link to kegg annotations (AT4G23940) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423765.1) |
| Pfam | ATPase family associated with various cellular activities (AAA) (PF00004.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |