Id Trinity | FTRINITY_DN54425_c2_g4_i2 |
---|---|
Name Transcript | Ll_transcript_237492 |
Sequence | GTGTGTAAGCAGAGCAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGGAAGTAAACTAGTAGTAACGTCTTCTTACACACAAACCCTAA TTCAATTCAATTGAAGAAAAGAGGAAGTTTATTCTTCATTCATTCATTCATTCTTCATCCATCTTCATCATGTGGACCAATGTTTTCAAAATTCCTGGTC TTCATCAGATATCATGGTTCCAATTCATGCCGCACGAACCTGACCTAAATCCTCCTCTACCTCTACCTGACAACAAAAGTGCAAAAGTGGATGCTGCAAT GTTACAAGTGCTTTCATCACATCTACAATTGCAGAAGGAAGGATTTCTCACTGCATGGACCAATTCCTTTGTCGGACCGTGGGACCCTTCTCAGGGTTTG CATAATCCTGATGAAAAGATCAAGCTCTGGCTTTTTATCCCTGGACGTCATTCATCGCTTCTTGACAATGCTCAACCTTTAGTATCCACACTAAGAGTCG TTGCCTCTGGCCTCTGGCTGGCTCCTGGGGATTCAGAAGAGGTTGCATCTGCTCTCTCTCAGGCTTTAAGGAATTGTATAGAAAGATCACTTATTGGGCT TTATTACATGAGATTTGGAGATGTATTTTCAAAGTTTCATCAACTTCAAAGTGAAGAACTGTTCAGGAGGGGGCATCCGGCACTTGAGTTTGCCTTTGCT GCAAATGAGGAGGCAATCTTTATACATGTCATACTGTCCTCAAAGCATATCCGGATGCTTACCACAGGTGATCTGGAAAAAGTATTAAAACATTCTACAG AGGCAACACATGGACTTCCAGTGATTGTTTCTCCTCATGGAATACGTGGCAGCCTCACTGGTTGTTCTCCAAGTGATCTCGTCAAGCAAAGCTATTTCAG CAGTTCTGCCAAGGTCAAGGCATCGAATGGAATTGTAGGTCTCCCATATCATGTTCCCCAAGGTGTTGGTTGCAAGCTGAGGGGGCAGAATTGTCATGTT GAAGTACGTCTTGGCTTCCCTAGACCTGGAACTGACAAGGCGTCACAGCAAAACAAAAATAATGTCAGGAATTTAACTAAGTTCAATGCTGCTGAATCTC TTGTTGTGGGACAAAGTGATCACAAGGGATCACCTAATCATTTGTCAGATTATGAGAAAACGTTTCTCTATCCAGCTGAGGCAGTGCTTGTGCCAGTTTT ACAAACATCATTAGCAAGATCTTCTTTGAGAAGATTTTGGCTGCAGAATTGGATGGGACCTTCCCTCCCTGGTTCCTTGTCCTTTATTCACTGTGCTGGT AATTTGGATAATTCTGAAGATCCATGGACTGAAATAAATGGAACCCGCACTCAAAATAGTTATGATAGTAGTAGCAATAGCAATAGTAGCAGCATCAGTA GCTTAAGCGCCAGCTCTAGTGATAGTGATTACAAGACTACAGGACCAAGTGAACTAGAGGCTGATGCTGATTCTTTAACATGTAGACAATCGGTGCTATC TTCCGGTGATCAGTTGCAAAGTGATGGCCTCAAATTGGTATATAATTAAAAAGTAATTTTGTTTTGTTTTGGACATAGGAAGAAAGTTAATGCGCTTTAC ACCAAACAGAAGGTAAATGCCTAGTCTTATCCCAACCCGTTTCCCTGTTGGTTACCCAATGAAACCTCCTTAAAAAGCATGAATACTACCTTTCAACCAA ATGCACCTAATAGTAGCATAGATTGCATATCGCTATAAAAACTTGGCCTCTTTACTTCTAAAAAAATCACTGAAGCAAATGAAAATTTCCCTTTTTAACA TGCTCATTGTTAGGCTCTAGGTAATGGTGGTAGTTTCCCGAATTTTAAAGATATGAAGGTATTTCTATTGACTGCGTTTTCTAAAATTGACCAAGAAAAG CTATAAACAAAACTATTAGAAGGGTTTCGAAGTAAATGGTTTGTTTATATACAATTTATTGTATGTGGTGTTGTTTGATCCATGTAGCCGAGCCACCTAA TGGGAGAAGTCTTGGTTATTGTTGCTACTTGCTACAATGTATTACTATTGGATGCAACTATGTTGCATTGATACTGGTGAGAGTAATAATTACAGTACTC TCAGGTATCAAATACAAGCATGCACAATCTTTTTAAACTAATATAAATGGGGTATTGTGCACATACTGGTAGTAATGCCCTTATCCTTTTGTTCTGGGTA AAGGTCTTTGGTCAATTTAATGGTGTACCCCTGCAATGTAGGGACAAAAATATGCATACTCCATTAGTTAGTCATTTATTTGGTTGTTTGCTCATGCATA TGGCTAAATTAATGTGCTTTTAAAGTAAAATGAAAAATATGCTTATTATGAAGTTTCTCTCTGATGAATATATGGAAGGTTCAGTGGGATTACTCAATGT CCTCTTATAATATTGTTGGTGTTTTTTGGAGGAAGAAGTCTTTTTTACTGTTCTGTTTTATGATCTTAGTTTTTTTGCAATTGAGCTGTATATCAACTCT AGTCTCTGTGCAGGGCTCTAAGCGGTCTCGAACAGGGGTGACAGAATCATTAAGCACAGCTACAAATGTTATCGTGCAAGATGCATACATGTCTGATGTG GGTTCCATGGAAGTTAACAATTCAGCCATTACTGTAGGAAATGAGCCTATTGGGTCGTACTGGAACTGGGATGATGATGATAGAGACCCAGTAATGGATA TTGGAGCTCTTCTGTCTGAGTTTGGTGATTTTGGTGATTTTTTTGTAAATGATGTTTTGCCTTTTGGAGAGCCCCCAGGAACTGCGGAATCTCAGGCACT TGTGTTTTCTGCACCGGATTGTGGAGATGTTAACAGCAGTCCAGTTGGAGTGATGGATGTTTCAGATCAAACGCTTTTGCCTGTTGGATTTACTTCTTTT GAGAGCTTTAATCCACCTCCTTCAATAGCCATGGAGGAATGTCTCAGCAAAAATCAAGATAACTTGAATAACTCCATGTCATCGGTTCCAGTCAATCAAA CTCAAATTTCATGTACACGGGAAGTTGAACATATAATGAAAGCTGAAGCAATGATGATATTTACTGCTGAATTTGGAGCCGTTGAGACCCCTACCAGTGA TTTGTCCACATTATTCACGAGCCCATATTTTCCAAAATCTCGAAAAGCAGAGAGTTCAAATTCAAGTTCAAACAATTACTTGTATGGTGCAGCACCACCC TCTACTCCCTACATTGATGGATCAGAGGGGAAGAATGGTATGGTGGCCACTACAAAAACAATTTGTGGAAAACATGATGCAAGTACGAGTCTCCACCCCA GAAATTACTATAATTATGTGGAGAGTAGGAAGGACATAAATGACAGAAAACCAGCTAATTTAAATGATAACGTCAACGGTAAATCTGAGGGGATGGTGCA ACCTCTGTTCTCAAATATTGGTTCCAATGCTGTCACCAAGTCTGTTCTAAGGAAGATGAGTGAAGGCACACATGAGACGGAGCATTTCCTTCTCTCTGCA AAAACTTTGTTAGCGACTGATGTCACATGTGTTATGTTGCAAGCTTCCATGTGCAGGCTACGACACATTCTCTTATCTTCTAGTAACCTCATGCCTGTTG GTTTGAGCAGGTCAACTGGGGCTACATTTTTTAATCAGCTTCCTGGTGACCCAAGTACAACAACAGACAACATATCCAATAAGTATGAGGTTAAGAAGAA AGAAAATATACCAGTTCGAATTGCAGGTGATATTGATGGAGGAATGCTTGATGGGCACCAGAACGCGCCTGTTGGTGTCTGGCGTACTGTAGGAGTTTCT AAAGTTGTAAAGTCTTCAAACTCGCCAAACATGGAAGTTGGTCCTTCCTTTTCTCATACTTCATTCAATGAAGATGGTATGCTTTCTTACAGTCAAAGAA AACCACTTCAGGAGCTTCTTGATGGGATTCCTTTGCTTGTCCAACAAGCTATTTCCTTTGTTGATCTGGCCTTGGATGCGGATTGGGGTGATGGTCCTTA TGGTTTGCTTGCATTGCAAGAACAGTGGAGGCGTGGATTTTGTTGTGGGCCTTCGATGGTCCATGCTGGTTGTGGGGGAACTCTTGCTTCATCTCATTCG TTGGACATTGCTGGTGTCGAGTTACTGGACCCACTTTCTGCTGATGTCCATGCATCTACTGTGATCAGTTTGCTGCAGTCTGATGTAAAAACAGCTTTAA AGTCTGCATTTTCCAATTTGGAAGGGCCATTATCTGTGACTGATTGGTGCAAAGGACGCAATCAGTTGGTTGATGCTGGCAGCATAGTTGATGGTGTTTC TGCTGAGTCCAGCATTAGTGAATGTAGGGATTCCTCAGAACCAATGAGTCCATCCCAGTCATCTGTCGCTGGATCATCCATTATTAAGGGATCTAGCATG ATGGATAGTGCTAAGGTGGATGAGATTTCCCAACGGAGAATTGGCCAAGATATATGCAGTTCAGAGTCAGAGCGGCAGCCATGTTCCCGGCTAAAACCTA CCCTCACTGCTCTTCCATTTCCTTCTATACTCATGGGGTATCAGGATGATTGGCTCAAGACATCAGCAAACTGTCTACAGTACTGGGAAAAGGCTCCTCT AGAACCCTATGCTCTACAGAAACCTATCACATATCATGTTGTATGTCCTGACATCGATCCTCTTACCTCTGCCGCTGCTGATTTTTTTCAACAACTAGGA ACTGTGTATGAGACATGCAAACTAGGTACTCATTCTCCACAAGTGTTGGGGAATCAGATGGAGATAGAGTCTGGGAAGTTGTCATCTAGTGGTTTTGTTT TACTTGATTGCCCCCAATCAATGAAGATTGAGAGCAGCCATGCGTCTCTTGTTGGTTCAATAAGTGATTATTTTTTATCTTTATCTAATGGTTGGGATCT GACTAGTTATCTGAAGTCTCTTTCAAAGGCGCTTAGAGCTTTAAAACTTAGTTCTTGCCTTTCCACAAACCCCACTGAAGGAAGCAACAGTTCATGCATG GTAATCTATGTGGTGTGCCCTTTTCCTGATCCTACTGCAATTTTGCAAACTGTAATTGAATCTTCCGTTGCCATTGGATCGGTTATCCAACAGTCAGATA GAGAGAAGAGATCTACCTTGCATAGTCAGGTTTTGAAGGCATTAAGTGGCTTGGCAACTGTTGATGAAGCTTCAGCATCTAATATCCTTGTCCTTTCTGG GTTTAGCATTCCAAAATTGGTCTTGCAGATAGTCACAGTTGATGCCATTTTCAGAGTCACAGGTCCATCAGTTAGTGAGCTTGCCATTTTGAAAGAGACT GCCTTCACTGTTTACAGCAAGGCTCGTCGAATTTCACGGGGAATCTCTAGTGACTTTCCTCTATCAGCATTTTCAGGTAGGTCTCATTCTGTTTTGACAC AAATGCCTTCTCCCATATCGGGGATGTGGAAAGACAGCGTTGGTCCTCGAATAGTAGGTCATTCTCTTCCAAGAGAGGGTGACATTGATGCTAGCTTGAG GTCTGGTGGGTGGGATAATTCTTGGCAACCAACGAGGAGTGCGGGATTGAACTGTGATCCAAGTAGATCTGGGGATACTTTTTTTCACGATGAAATTAGG TACATGTTTGAACCCCTTTTTATTCTAGCAGAACCAGGTTCTCTAGATCATGGTACTTCTGTTATTGGTAGCCCCACTTCAGAATCTTCAAAAACATTGG GAGATGACAGTAGTGGTAGCTATATGCAGCAGAGTACAAGTACAGCTGGAAGCATGGATTCTGCTTCAAGCATTGATGGCTTAGGGTCTGATCAAAAGAC TCCTCCGAGCCTACATTGTTGCTATGGATGGACCGAGGACTGGCGTTGGCTTGTATGCATCTGGACAGATTCAAGGGGAGAACTGCTTGACTGCAATATT TTCCCCTTTGGTGGAATAAGCAGTAGGCAGGATACCAAGGGTCTGCAATGCCTATTTGCTCAAGTTCTTCAGCAAGGTTGTCTAATACTTCAATCTTGTG ATACCAGTCTTGCAAAACCTCGAGATTTTGTGATAGCACGCATTGGTGGTTTCTACGAGCTTGAATACCTTGAGTGGCAAAAAGCCATCTATTCATTTGG TGGATCTGAGATGAAGAGATGGCCCCTGCAACTCCGGAAATATATGTCGGATGGGGTGTCCATAACTAGTAATGGTTCTTCTTTACAACAACCAGAGATG AGTTTGATCCCAGAAAGAACTCTCCCTTCTTCACCTAGTCCTTTGTACAGCCCTCATACCAAAGCCACTGGTTTTATGAAAGGCGGCAGTTTAGGGCAAT CTGCTGTGAGAAAGCAGCATATGGGTGGACATTCTATGGTTGACAACAATTCAAGGGGTTTACTTCATTGGGCACAAAGCATTAGTTTTGTTGCAGTTTC TATGGATCATACATTACAGCTTGTTCTCCCAGCTTCTGATTCATCTGGTTACACAGAAGGTTTTACTCCAGTGAAGTCTCTTGGTTCTACGTCTTGCGCG TATGTTGTAATTCCTTCTCCTAGTATGAGGTTCCTTCCTCCAACAGCTCTTCAACTCCCGACATGCCTCACTGCAGAATCTCCACCTCTAGCTCATCTGC TTCACAGCAAGGGTTCTGCTCTTCCACTGTCCACAGGATTTGTGGTTTCAAAAGCAGTACCTTCCATGAGGAAGGACCACAGAAGCAACCTGAAAGAAGA ATGGCCTTCAGTACTTTCAGTGAGCCTCATTGATTACTATGGAGTTGCTAATATCCGAGGAATTAACAATAAGCAGCAAGGTGGTGGTAGAAGTTTAAGC TGGGAAACTAAAGATTTTGAAACAGAGACCCACTTGGTTCTGGAGACCCTTGCTGCAGAGCTTCATGCTTTGTCATGGATGACTGTGAGCCCCACATACA TAGAGCGGCGAACGTCACTTCCTTTCCACTGTGACATGGTTCTAAGACTAAGAAGACTTCTTCACTTTGCTGATAAAGAGCTATCTAAGAAGTCAGAGAA ATCTTGACTACACCATATGCTATGATTAATACACTGCAATACTGCATCCTATCCTATCCATACATATTAATTATATTGATCCTTTGTAAAATATTTGTAA AGCCTCTTCCTTGTGTGTTCCAGGAAGAAAGATTTAGCAGTTGTAGGGTATGACTGGAAATAGTTGAGAATGCATGTACATGAGTTGAGTTTTCTAGAGC AGCTGATTGTTAGCATTATTGATTTATTGATGAAAGCTGTTGATGGCACATAGGACTTTGACTATGGTTTTCTTGTAGAAAAGTGCATGAGAAAACCTTC AAGCAAGTCCATCTAGTAAGTAGAATGCAGCTAGGTGTGAGGGGATAATAAAATCTAATTATACTTGATTAACACTTTGTTGACACCTTATCTTTATTAT AATAAAAATTTATGCTACTCGCACTTTTGTCGGGTGATGAGGAAATGATAAAACTTTTGAATCCTAAACCATGTTTCTTCACCTCAAATCTTAAGCAAAA TGTTTTTAGCATTCTTCTAACACTAACACTCTGTTTGGTTTAAAGAGGACAATAGAAAGAAAGAAAACGGAAGGAAAGAAAAAAGAAGGAATGAAAATAA GTAGAAAATAAGGTGAAAAGACTATTATAGCAACAATAATATAAAATGTATCTAATAAAATAGAAATATTAAACACAATTGACATAATATCAATGAACAT AAAATATATGACATTCAAA BLAST |
Tissue | flowers |
Gene name | LI_gene_42506; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_237492
Blastp | Mediator of RNA polymerase II transcription subunit 13 from Arabidopsis with 57.86% of identity |
---|---|
Blastx | Mediator of RNA polymerase II transcription subunit 13 from Arabidopsis with 57.98% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (AT1G55325) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019438261.1) |
Pfam | Mediator complex subunit 13 C-terminal (PF06333.11) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |