Id Trinity | FTRINITY_DN54604_c7_g1_i3 |
---|---|
Name Transcript | Ll_transcript_1291 |
Sequence | ATGCACATTAGTTTTTTCTACGGACAAGTGCTTAATTCTGGAAATGAACTCATTTGGAATAACTGGTGTAGTTGAGCTTAAAGGAAGCCTATACATAATG AATCAACCGGGCAAGAAACATCTTAAGGACATTTGTCTCATAGTAAACTCATACATATGCATACTTTATTCCCTTTCATTAAATGCAATAAAACAATAGA TCGATGTGATATTTACCAGTTAGCTAAACAAAAGAAATTACCATATTCTATTAGCAATATAGTAAATGTGTTTATGCATTTGATTTGGTACACATGAACA TTTGGGGACCCTCATCTACCCCTTCTACTTTAGGTCATCGGTACTTTTTAAATATTATAGAGGATAAGACAAGATTTACTTGAACCTTCTTTATGAAGGC TAAATCAGAAACAAGTCAATTGGTTAGGTATTTTGTTTGCTATATAGAAACTCAGTTTAATTTCAAACTGAAAGCTATTAGAAGTGATAATGGAAAAGAG TTTATTCTTAAAGATTTCTATCTTTCAAGAGGAATTGAACATCAAACCACTTGTGTGGAAACTCCGCAATAAAATGGTATTTTTGAAAGAAAGTATCAAC ATATTTTAGTTGTTGCAAGAGATCTTATATTTCGTTCAAATATTCCCTTATGTTTTTGGAACTATAGTAGTAGTCATGATGTTCATCTAATTAATAGGCA GCTAACAAATTTTTTTTCCAACAAATCCCCCTTATGAGGAACTCTATAATACACTGCCTAATATCAAACATCTCAAAAATTTTGACAGCCTATGCTATTC TTCCATATTAGTTTCTCATAGAAGAAAACTTGATCCTAGATCAATAAAATGTGTGCTTCTAGGATTTCATAGGGGAACAAAAGGATACATCTTTTTAGAT CTTAACATCAATGGGATCTTTATCTCAAGAAATATTCAATTTTTTTAACATATCTTTCCCTTCACCAAGACTGAATCACAAGACTCAGTCCAACCTATCC TTCTAATTCATGAAAATGATCCCTTTAACTACTGGATTGATTCATCCTATGGCACTGAGCTTAGAACTCCCAATTATCAGACTACATCTGATAATACTAC ACATGAAAACATTCAGGAAAATCTAGTTAGACACTCAAAAGGATTAGAAAAACTCTTAATTACCTGAATGATTATCATTTCACTTTGGCCTCTGACTCAC AACCATCCTCATCTGCTCAGGTTGAGTATCCTATTTCTAATTACATTTCTTATAACAATTTGTCTCCAACTCACAAACATTATTCTTTGAGCATTTCTCT TAGTCCTACTCCTATAAGCTATCGTGAAGCTATTTTGCAAGACTAATGGAAAAGGCTATTGAAGTAGAATTGACAGCATTATAGAAGAACAATACTTGGT TCCTGACTACTCTGCCCACTGAAAAGAGAGCAATAAGAAGTAAATGAGTATTTAAGTTGAAGTATAATGCATATGGTTAAATAGAGAGATATAAGGCAAG ATTGGTGGCCAAAGGTTTCAATCAAACTCAATGAATAGACCACAAGGAAACATTCAGCCATGTTGTAAAGATGACAACTATCAGGGTTCTTTTAACTCTT GTTGCAATTCACAATTGACACCAATATCAACTTGACATCAACACGACCTCCTTACATAGAGAACTAAAGGATGAGGTTTATATGAAAACTCATATTAGCT TACACATATATAACCCTAACCTTGTATGCATATTACAAAGATCATTTTATGGATATAAGCAAGCCAACAGAGAATGGCATGACGAACTCACAAAGAGACT AGTGACTACTGGTTACTCAAAGTGTAACTTAGATCATTCTTTATTTGTTAAATCAGTTGACACAAACTTTACTGCAATTCTAATCTATGTTGATGATATA GTTTTAACAGGAAATGATTTGAAAGAAATATATAATACCAAAGCTGTTTTGCACAAAGAATTCAGTATCAAAGATCTTGGAAAGCTCAAATTATTTTTGG GAATGGAGGTTGTTAGAAGCACGAAAGGGATAACTTTGTATCAAAGAAAATACACCATGGACTTATTACAACAATCAAAGCATCTTTCTTGCAAACCAGC CTCCACTCTAATTGAACACAATCACAAACTGCAAGCAGATTTAGGAGAGCCTCTTCAAGATGCTACTTCATACAGAAGACTATTGGGAAAACTACTTATC TAACCCACACCAACTAGACATATCATATGCAATGGGATGTCTCAGTCAATCTCTAGCTCATTCTACCAAACCACATCAACAAGTTGCCTATAAAATTCTT AGATATCTCAAGACTTCACCAACACATGGACTATTGTTTCCTAACAACAACACAATAGTTCTCAAAGGCGACTCAGACTCAAATGGTGGTGCTTGCCTCG ACACTAGAATATTGATCACAGGTTGATGTTTTTACATGGGATCAGCTCTGATTTCTTGAAAAAGTAAGAAGCAGAATACAGTTTCCAGATTATTAGCTGG AGCAGAATACAGGTCCCTTGCAATGACAGCATGTGAAGCTCAATGGTTGCTTCATTTATACAGAGACTTGGGGATCAAACACACTACACCAATTAGTCTA TTTTGTGATAAGAAATCCACATTGTATCTAGTAGTAAATTCAGTCTTCCATGAACGAATAAAGTATATGGAGATAGATTATCATGTAGTTCGTGAAAGAG TGGTAAATGAAGCTCTTCATCTGCTTCCTATCCCCTCTTCTCTTCAAGTGCCATATTTTTCACTAAATCTCTCACACCTACGCCTTTCAAAAACTAATCA ACTAAGATTGGTATGATTAACATTCATACTCAAGCTTATGAGGGGCTATTAAGAGATAAATTCATAGCTCAAGACACAAAAGAACATAGCCCAATTGAAG CCCGATCAAATTAATTCTTTTTCTCTAACTTTTCTTTTTAGTATCTTTCCTTTTTCAGTTTCAGTTATTTTAATTTAAGTTTCTATTACAGTCTTTCTTT ATTTCTTGGCCAG BLAST |
Tissue | flowers |
Gene name | LI_gene_44165; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_1291
Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 35% of identity |
---|---|
Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 39.02% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_017415205.1) |
Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |