Ll_transcript_1780

• Id Trinity: FTRINITY_DN54626_c6_g1_i7
• Name Transcript: Ll_transcript_1780
• Sequence: ACCATCTGGGAACGAGAAGGTGGTGTGTAAACAGTGTTAGATTAAGTGAAGGGAGAAGAAGGAAATGGGTATTTCCAGCACTAGCAGAATCTCATGGTTT TGAGGATGTGAAGCAGTTAGAGGAAAACCAGGGGATGAAGATAGTTGGTTTATTACCCTATTGGTTGAACACAGCTGAAGGGGGTGCTGTTCATAATACT GTTGATATGCAATCATTGTTTCTTTTGACTGGACCAAATGGTGGTGGCAAATCTAGTATACTTAGGTCATTATGTGCTGCCGCACTACTTGGTGTATGTG GACTTACAGTTCCTGCTGAATCAGCTTTGATGCCTTGTTTTGATTCCATCATGCTTCATATGAAGTCTTATGATAGCCCAGCCGATGAAAAAAGTTCATT TCAGGTAGAAATGTCAGAGCTTCGATCAATCATTGCTGGGACATCCAAAAGAAGCCTTGTGCTCATTGATGAAATATGCAGAGGAACAGAAACTGCAAAA GGGACTTGTATTGCAGGCAGCATCATTGAAACTCTTGATCAAATTGGTTGCCTGGGCATTGTATCAACTCACTTGCATGGAATATTTACTTTGCCATTAA ACATCAAGAACACTGTGTACAAAGCAATGGGGACAGTATGCATTGACGGACAGACAAAACCCACATGGAAGTTGATAGATGGAATATGTAAAGAAAGTCT TGCTTTTGAAACAGCCAAGAGAGAAGGAATGCCTGAGTCTATTATCGAAAGAGCTGAAGAACTTTACCTGTCACATGCAAAGGAATTGCTTCCTGGCGAA AATTGCCCAAAGCAGAAACAATATTCTTATGACATTAATGTTAATAACTCTAATGGAACACATCTTAATTCAAGAATGTTTATGCCAGGAACTTCTCATG ATAGGATAAGTTTAGCTAATCAAGTGGAAGATTTACACAAAAAGGTTGAGAGTGCTGTAACTGAAATATGCCACAAGAAGGTAATGGAGCTCCAAAGAAA CAAAATAATATCAGAGCTTACCGAGATAAAATGTGTCCTAATCAGTGCAAGGGAACAACCACCTCCATCTACTGTAGGTTCTTCAAGTGTCTATGTGATT GTCAGACCAGATAAGAAGCTCTATGTAGGACAGACAGATGATCTTGAAGGCCGAGTTCGTTCCCATCGTTTAAAGGAAGGACTGCAGAATGCATCATTCC TTTATTTCCTTGTCCCTGGAAAGAGCCTGGCATGTGAGTTAGAAACTCTGCTCATAAACCAGCTTCCTAGTCAAGGCTTTCAGCTAGCCAATGTGGCTGA TGGCAAGCATAGGAATTTTGGCACTTCCAACCTTCACACAGAATGTGTTGCTACTTCTTAATATATGTTGAAAATCCCTATTCAGTAGTTTTGTAATCTG GAAATGATAGTTAGAAATATTTTACATTGACAAACCATGGGAAATTTATATCAGGTGATGAATGAAACTCAGGAAGCAGTGGCTGCAGCGTTTTTGGTAG ATGTAACTGCTGCAGCTGCATTTTAGTTCAACCCTGCTAGCATGTGTAATATTTTTGTAAACCTGACCATGCAGTGCAAATGCAAATTGTCTCTATGCTA TGCTGGCAACATCAGTTGTCAAATTAATGTGTATGTTTGGTTGATATGTTTATGAAAAAAAAACTTATAAA
• Tissue: flowers
• Gene name: LI_gene_44380;
• Additional information: details;

Expression of Ll_transcript_1780

FPKM

• FPAB: 0.7
• FPNAB: 0.6
• LF1: 0.2
• LF2: 0.5
• LF3: 0.2
• LF4: 0.7
• UF1: 1
• UF2: 0.7
• UF3: 0.4
• UF4: 0.7

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_1780

• Blastp: DNA mismatch repair protein MSH1, mitochondrial from Arabidopsis with 63.4% of identity
• Blastx: DNA mismatch repair protein MSH1, mitochondrial from Arabidopsis with 63.4% of identity
• Eggnog: that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
• Kegg: Link to kegg annotations (AT3G24320)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428545.1)
• Pfam: MutS domain V (PF00488.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;