Ll_transcript_1782

Id TrinityFTRINITY_DN54626_c6_g1_i9
Name TranscriptLl_transcript_1782
SequenceATAGTTTACAACGTAAGCACAAATGGGAAAGGCAGTTGCTGGAAGACCATGGAATGCATAAAGTTCCTATTTTAGGACAACCTGAGCAAGTATTGTGCTT TACAGATAGGAAGGTAGTGCGGGGGAGCAGTAAAGCAGCCAAGAAGCACAAAGCACAAAATATTGTTTTAGATGATAAAAATCTTTCTCACATATTGTGG TGGAAGGAGAGGATGGAAATATTCAGAAAGCCTTCAACTATCCAGCTGTTGAGAAGGCTCGAATATTCTAATTTACTGGGCTTGGACACTAACTTGAAAA ATGGAAGTTTGAAGGAAGGAACACTCAATTGGGAAATATTGCAGTTCAAGTCAAGATTTCCACGTGAAGTTTTGCTTTGCAGAGTTGGGGACTTCTATGA AGCTATCGGGATAGATGCTTGTATTCTTGTTGAATATGCAGGTCTAAATCCCTTTGGTGGTCTGCGGTCAGACAGTATTCCAAGAGCTGGTTGCCCTGTT GTGAATCTTCGACAGACCTTGGATGATTTAACACGCAATGGTTTTTCAGTGTGCATTGTGGAGGAAGTTCAGGGTCCAGCCCAAGCACGAGGCAGGAAAG ATCGCTTTATATCTGGGCATGCTCATCCTGGAAATCCTTACGTATATGGACTTGTAGGGGTTGACCACGACCTTGACTTTCCAGAACCAATGCCTGTTGT AGGAATATCACGTTCTGCAAGGGGATATTGCATAATTTTGGTGCTAGAGACCATGAAGACATATTCTTCAGAGGATAGTTTGACTGAGGAAGCTGTTGTT ACAAAGCTTCGTACTTGTCACTACCATCACTTATTTATTCATACATCTTTGAGGAAGAACTCTTCAGGCACCTTCCGTTGGAGTGAATATGGTGAGGGAG GCCTCTTGTGGGGAGAATGTAGCTCCAAGTATTTTGAATGGTTTGATGGAAACCCTGTCTCTGAAATTTTGTTCAAGGTAAAGGAGCTTTATGGTCTGGA TGACGAGGTTATATTCAGGAATACAACTGTGCCTTTAGAAAATAGACCCCGTCCTTTAACTCTTGGAACAGCTACTCAAATTGGTGTCATACCAACAGAA GGAATACCTTCTCTGTTGAAAGTGATACTTCCGTCAAATTGCACTGGATTGCCTCTATTGTATGTGAGGGATCTTCTTTTGAATCCCCCTTCTTATGAGA TCGCTTCAACAATTCAAGCAACATGCAAACTTATGAGCAGCGTAACATGCTCAATTCCCGAATTTACATGTGTTCCATCAGCGAAGCTTGTAAAACTAAT TGAATCAAAGGAGGCCAATCATATCGAATTTTGTAGAATAAAGAATGTACTTGATGAAATTTTGAAGATGTACAGAACCATTGAGCTCAATGAAATATTG GAACTTTTAACTCATCCCACATGGGTGGCAACTGGATTAAAACTTGACTTTGAAACCTTGGTTAATGGGTGTGAAGTGGCATCAAGTAAGATTGGTGAAA TAATCTCTCTGGATGGTGAGGATGATCAGAAAGTCAGTTTCTTTTCTGCCATTCCAAATGATTTTTTTGAGAATATGGAGTTTTCATGGAAAGGTCGAGT TAAAAGAGTCCACATAGATGATGCATTTGCTGAAGTTGAAAAGGCAGCCGAGGCCTTACATTTTGCATGTTTTAAGTGAAGAAAATGAAGTAAATTTCAT GAATAGAACCTACGTCTCAGCCCATCTGCAACAGTGGTGCTGCTTCCTGCCCTGCCTCAATGCCTAGGTTACTGAAGATTTCAGTCCTATTGTATCTAGA ATAAAAGCTACTTCATCTCCACTTGGAGGCCCTAAAGGAGAAATATTATATGCTCGGGAGCATGAGGCAGTTTGGTTTAAGGGCAAGCGTTTTACTCCAA TTGTCTGGGCTGGCAGCCCTGGAGAGGAGCAGATTAAACAGCTTAAACCTGCTTTAGATTCTAAAGGTAAAAGGGCAGGCGAGGAATGGTTTACCACAAT GAAGGTGGAAGCTGCCTTAATAAGGTACCACCAAGCATGTGCCAAGGCAAAATCAAAGGTTTTGGAAATTTTAAGGGAACTTTCTGCAGAATTACAGTCC GATATAAACATCATTGTCTTTGCTTCCATGTTGCTTGTAATTGCCAAAGCATTGTTTTCTCATGTGAGTGAAGGGAGAAGAAGGAAATGGGTATTTCCAG CACTAGCAGAATCTCATGGTTTTGAGGATGTGAAGCAGTTAGAGGAAAACCAGGGGATGAAGATAGTTGGTTTATTACCCTATTGGTTGAACACAGCTGA AGGGGGTGCTGTTCATAATACTGTTGATATGCAATCATTGTTTCTTTTGACTGGACCAAATGGTGGTGGCAAATCTAGTATACTTAGGTCATTATGTGCT GCCGCACTACTTGGTGTATGTGGACTTACAGTTCCTGCTGAATCAGCTTTGATGCCTTGTTTTGATTCCATCATGCTTCATATGAAGTCTTATGATAGCC CAGCCGATGAAAAAAGTTCATTTCAGGTAGAAATGTCAGAGCTTCGATCAATCATTGCTGGGACATCCAAAAGAAGCCTTGTGCTCATTGATGAAATATG CAGAGGAACAGAAACTGCAAAAGGGACTTGTATTGCAGGCAGCATCATTGAAACTCTTGATCAAATTGGTTGCCTGGGCATTGTATCAACTCACTTGCAT GGAATATTTACTTTGCCATTAAACATCAAGAACACTGTGTACAAAGCAATGGGGACAGTATGCATTGACGGACAGACAAAACCCACATGGAAGTTGATAG ATGGAATATGTAAAGAAAGTCTTGCTTTTGAAACAGCCAAGAGAGAAGGAATGCCTGAGTCTATTATCGAAAGAGCTGAAGAACTTTACCTGTCACATGC AAAGGAATTGCTTCCTGGCGAAAATTGCCCAAAGCAGAAACAATATTCTTATGACATTAATGTTAATAACTCTAATGGAACACATCTTAATTCAAGAATG TTTATGCCAGGAACTTCTCATGATAGGATAAGTTTAGCTAATCAAGTGGAAGATTTACACAAAAAGGTTGAGAGTGCTGTAACTGAAATATGCCACAAGA AGGTAATGGAGCTCCAAAGAAACAAAATAATATCAGAGCTTACCGAGATAAAATGTGTCCTAATCAGTGCAAGGGAACAACCACCTCCATCTACTGTAGG TTCTTCAAGTGTCTATGTGATTGTCAGACCAGATAAGAAGCTCTATGTAGGACAGACAGATGATCTTGAAGGCCGAGTTCGTTCCCATCGTTTAAAGGAA GGACTGCAGAATGCATCATTCCTTTATTTCCTTGTCCCTGGAAAGAGCCTGGCATGTGAGTTAGAAACTCTGCTCATAAACCAGCTTCCTAGTCAAGGCT TTCAGCTAGCCAATGTGGCTGATGGCAAGCATAGGAATTTTGGCACTTCCAACCTTCACACAGAATGTGTTGCTACTTCTTAATATATGTTGAAAATCCC TATTCAGTAGTTTTGTAATCTGGAAATGATAGTTAGAAATATTTTACATTGACAAACCATGGGAAATTTATATCAGGTGATGAATGAAACTCAGGAAGCA GTGGCTGCAGCGTTTTTGGTAGATGTAACTGCTGCAGCTGCATTTTAGTTCAACCCTGCTAGCATGTGTAATATTTTTGTAAACCTGACCATGCAGTGCA AATGCAAATTGTCTCTATGCTATGCTGGCAACATCAGTTGTCAAATTAATGTGTATGTTTGGTTGATATGTTTATGAAAAAAAAACTTATAAA BLAST
Tissueflowers
Gene nameLI_gene_44380; 
Additional informationdetails; 

Expression of Ll_transcript_1782

Labels

FPAB abscising flower pedicels
FPNAB    non-abscising flower pedicels
LF1 lower flowers stage 1
LF2 lower flowers stage 2
LF3 lower flowers stage 3
LF4 lower flowers stage 4
UF1 upper flowers stage 1
UF2 upper flowers stage 2
UF3 upper flowers stage 3
UF4 upper flowers stage 4

Annotations of Ll_transcript_1782
BlastpDNA mismatch repair protein MSH1, mitochondrial from Arabidopsis with 63.92% of identity
BlastxDNA mismatch repair protein MSH1, mitochondrial from Arabidopsis with 71.83% of identity
Eggnogthat it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
KeggLink to kegg annotations (AT3G24320)
CantataDBLink to cantataDB annotations (CNT0002490)
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019428545.1)
PfamMutS domain V (PF00488.20)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;