| Id Trinity | FTRINITY_DN54634_c5_g2_i9 |
|---|---|
| Name Transcript | Ll_transcript_2312 |
| Sequence | CAGGAACACACAGAAAAGTGTGGGGGGAACATAACTCAAACATTGCATTCTACGAGAGAAAGGGAATCGAAGGCCACAAAGTTTGCAATTTGAATCTGAA AAGAAGAAGAAGAAAGAAAAGCTGGTAGATATGGCAGGAGTTGTGTCTGGAGATTTGTCACATCATGGATCATCTGAAGGTGACTCTTACAGAAGTTCTA AAGACAAGCTTGAGGAAGGAATAGGCTGCTGGTACATGTCTAGAAGAGAAATAGAGGAAAATTCTCCATCAAGAATAGATGGAATTGACTTGAAGAAAGA GACTTATTTGCGCAAATCATATTGCACATTTTTACAGGATTTGGGCATGAGACTTAAAGTGCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCAT CGGTTCTTTCTTCGACAATCTCATGCAAGGAATGACCGAAGGACCATTGCTACTGTCTGTATGTTCCTTGCTGGGAAGGTTGAGGAGACCCCTCGTCCCT TGAAGGATGTTATTCTCGTGTCATATGAGATCATTCACAAGAAGGATCCTGCAGCTGCACAGAGGATAAAACAAAAGGGAGTATATGAGCAACAGAAAGA ATTAATTTTACTTGCAGAGAGGATTGTTCTTGCCACTTTAGCTTTTGACCTGAATGTTCAACATCCCTATAAGCCCCTTGTTGAGGCCATAAAGAAGTTC AATGTTGCAAAGAATGCTCTTGCACAAGTTGCATGGAACTTTGTTAATGATGGGTATGACTAAGTTGCTATTTGTTCTGATTTAACCTTGTTGTATCCAT TTTATAATATATTTGTTCACACACTGGATAGTGGCTTTCAGGCTGAGGACATCGCTCTGCCTGCAATTTAAGCCACATCATATTGCGGCAGGTGCCATTT TCCTTGCTGCCAAGTTCCTGAAAGTGAAGCTTCCATCAGATGGTGACAAGGTTTGGTGGCAAGAGTTTGATGTCACCCCACGCCAATTGGAGGAGGTTAG CAATCAAATGTTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_44440; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_2312
| Blastp | Cyclin-T1-4 from Oryza sativa with 81.34% of identity |
|---|---|
| Blastx | Cyclin-T1-4 from Oryza sativa with 81.73% of identity |
| Eggnog | Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase cdk8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex(COG5333) |
| Kegg | Link to kegg annotations (4352229) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019422010.1) |
| Pfam | Cyclin, N-terminal domain (PF00134.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |