| Id Trinity | FTRINITY_DN54824_c1_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_93226 |
| Sequence | CTCACTTTTCTTCAAACTTTTTTAAACCCTAAAACTCTTTCTCTGCTATATTTTTGTTTTAATTCCTTTTTACGATGCTTGATTTTGCTGCTATAACGTT AAGCCACATTTCATGCCATGATTTTGAACTTTAGATCTGTTTTCTGGTTTCAATGCCAAAATAGCATAGCTTATTATTATTATTATTATTGGTGTTGTTC ACAGCGTGCTTATTTCCATGTAGTTACTGATACTACTTTATAACTACGACGTGTTGTGAAAATTTGGTGTTTTTATTTCTGACTTTTCAATAGGTGTAAT GTAATGAACTGTGAGCAATTTATTAGCCTCATTTGGTCCTGTGAATATTGCTCTCTTTATGAAGGAAGTGATTTTCGAAATTCTGTTGTGATGGCACCTT TTCTTCTTTACATATAGACTACTCTGCTTTGGCTTTTCTACTTTCTAATGTGATTGATGCTTATTATTTTTTTCGTAATAGGTCGGGTTATGAGCTTATA ACCGTTTCAAGATGCACATTAAGCAGATTGTGATTGAAGGCTTTAAGAGTTACAAAGAACAAGTTGCAACAGAGCCTTTCAGTTCTAAAGTTAACTGTGT CGTTGGTGCTAATGGATCTGGGAAAACAAACTTCTTCCATGCCATTCGTTTTGTTTTAAGTGATCTATTTCAGAACCTACGCAGTGAGGATAGACATGCA CTACTCCATGAAGGAGCTGGACACCAGGTTGTATCTGCATTTGTGGAGATTGTGTTTGATAATTCAGACAACCGTATCCCGGTAATGATTTGATAATTTC TTTTTCCAGTAAGTTGCAGAAGGAGGATAATTTTCAATTTTTTAATTGTTTCTTAAACTTTGTTTAAACATCACTTAATGCATATTTTCTTTTAGGTCTA GATAAAATAATGATGCTATTTTTTTTGTAGTAAACAGTTTATAGCAAAATCATGATTGCTATGGTGAGGAAAGTATAGCCTTATTTGACAGTTATTCTAT TTCAATCACAGGATAAATTGTCTAGTGGCTGTTATGGAGCATATTCTCATGGGTTTTGCTAATTAGTCACCTTTCTTTTTGCTATTTTTAATCTCTATCT TTCATGTTGTGATGATTGGTCGTATATTTATTTTCTTGTGTTGCGCTAATGAGTGCATATTAGTGGCTATACTGCTCAACGTATATGGAGAAATGCTGTA GGCATAAGGGAAAGATTTTTAGTTTTGGGTTAATGAAGATTTTTGTGATGACTGGATGAGTATTATGTTTTTTGCCCTTTAATTTTTTTGCCATATTTAT CTAATTTTCTATATTGATTAATGTTCTTCTCAATTCCATTTTTGAAAGTCCTGGCGCCGATCTTATGGGTTTTGATGTTAAATACTTTCTGCTAGCCTTG ACGTAATTTTATCAGTGATGAGATGTTCTTGTTTGGTCAGATATTTGAATATTTTTATTTTGATGACAGATTCTTTTAGTACAGTCACATTTTCATATAC TTGTTTTAGGTCAACTATCCTTTTTTAAGGTTGCAAGTGAAAACTCAGTGTCAGTCCTTGCTGATGTGATGTATACATTGCTTCAATTTCCCTTTCTCTG TTCAGATGAGTGGTTTATGTTCCATAACCACTTATTTGCAACATTTTGTTTCTTTGCATTATCTTAGTATCTGTCTGTGCCCCTGATTAGGTTGACAAGG AGGAAGTGCGCTTGCGAAGGACTATTGGTGCGAAAAAGGATGAGTATTTTCTAGATGGAAAACACATAACAAAAACTGAAGTGATGAATTTATTGGAGAG TGCTGGGTTCTCTCGCTCAAATCCTTACTATGTTGTACAACAAGGAAAGATTGCTTCACTTACCTTAATGAAAGACTCTGAGCGATTGGATTTGCTGAAA GAAATTGGTGGTACCAGAGTTTATGAGGAGAGGCGCCGTGAAAGTTTGAAAATAATGCAGGAAACAGGTAACAAAAGAAAGCAAATAATTCAAGTTGTAC AGTATTTGGATGAGAGGTTGAAGGAGCTAGATGAGGAAAAAGAGGAACTAAGAAAATATCAACAGCTTGACAAACAAAGAAAATCCTTGGAATATGCTAT TTATAACAAGGAAGTTCAAGATGCTCAGCAGAAACTTACAGAGATAGAAGATGCTCGAGCCAAGATTTCTGAAACGTCGGCAAAGATGTATAATGACGTG CTTGATGCACATGAGAAATCCAAAGATTTAGAGAATACATTGAAAGATGTAACAAAAGAACTTAATAACTTTAACAAAGAGAAAGAAGTTATAGAAAAAC GACGAACGGAGGCATTAAAGAAGCACACAGAGCTTGAGCTTGATGTCAAAGATCTAAAGGACAAGATCTCTGGAAATAAAAAAGCCAAAGAAGATGCTGT AAAACAACTTGGGACACTTGAGAAAGAAATTCAAGACTCGATGAATGAACTGGACAAGATCAGTCCTTCATATGAGGATCAAATTAGAAAAGAAAATGCA ATTGCCAAGCGAATAATGGAGCGTGAGAAGCAACTTAGTATACTTTACCAAAAGCAGGGGCGAGCAACCCAGTTTCCAAGCAAAGCTGCTCGTGATAAGT GGCTTCAAAAGGAGATTGACGATCTTAAAGGAGTGCTTTCTTCTAACACAGGGCAGGAGCAAAAGCTTATGGAAGAAATTGACCGGCTTAATGGTCAGCT TCATGAGTGTGATGAGTGCATTAAGAGTCGTAGGTCAGAGATTACTACATTGGAATCTCTCATTACAAAATCACGTGAAGGGTTTAATCATCATAAAGAA CAAAGAGACATTTTGCATGACGAGAGGAAATCCCTATGGGCCAAAGAGAATCAACTTACTGCTGAAATTGATAAGCTGAGAGCAGAAAAGGAGAAGGCTG AAAAGAGTCTTGATCATGCAATTCCTGGTGATGTCAGAAGAGGGTTGAATTCAGTTCGGAAGATATGCAGGGAGTATAAGATTTCTGGAGTTCATGGTCC TATTATGGAGTTGCTGAACTGCGATGAGAAGTTTTTCACCGCAGTTGAAGTTACTGCTGGAAACAGCTTATTTCACGTGGTTGTTGATAATGATGAGACA TCTACCCAGATAATTAGACATCTTAATTCACAGAAAGGCGGACGAGTTACATTTATTCCCCTTAACAGAGTGAAGGCTCCACGCATTACTTATCCACAGA GTTCTGATGTCATACCTCTTTTAAAGAAGTTGAACTTTAAACATGAATATACACCCGCATTTAGCCAGGTATTTGCTAGAACAGTGATCTGCAAGAATCT GGATGTGGCTTCAAGGGTTGCTCGTAATGATGGTCTGGACTGCATAACATTGGAAGGTGATCAAGTAAGCAAGAAAGGTAGTATGACTGGAGGATTTTAC GATCACAGACGATCAAAGTTGAAGTTTATGAATATCATCAAGCAGAATGAAGACAATATTTACGAGAGAGAGGTCCAGTTGAATGAAGTTAGATCCAATC TAAAAGATATCCTTTTACACTTGTTTTTATTAACATTCTTGTATTGTTTTTCCTTCTTTTAAATTATAATTTATTGAAGGCATAGAAAAAACAGAGGAAC TAAAAGAAAATAAATCCAGAGTATGACCTGAATCAGCTGATCAAATATTTGAAAAAAAACTGACTGTGGAGAGAGGAAACAGTTTGGTAATGTGTCCCCA ATCGCAATATCTCTTGTTTTGTTTTTTATTTACTCACATTATGTTAAATGCATATTTTTGCCCAAGGAGGTCATATATAGGAAGGAGATAGTTCATAGCG TCAGACATGTGGAGGAAGGCTTATTCGGTGAATGACTGAGCAAGCGAGCTTTTGTGTACAACAGTGGTGCCATGGACAATAGTGGCTTGGCACTATAAAT TTGGTTGGCGGTGTCGGGCTTAGTGAACACTTGGGTGGAAGTAGAGAATAATGGCTATGACTTACTAAGCATCGGGATTTGAATTGAATAGATATGATTG TGAGAAGCAGAGATGGCCATGGCTAGTTGGGTATAGTTGCCCACACGATAGATGAAGAGTTCAGAGTTTGATTTTTAATTACTTTAAAATTATTTCTTGG ATAAATTATATCATGGAAACTGCCTCTTACCTTGCAATGGTAAGGCTGCATATATATATACCTTCTATAGACTCCATTAGGTGAGAGCCTCATGCACTGA GCTGCCTTTTTTTAGAGAGTTTTAATTTTAAAATTGTTTTTAAAACAACATTATCAAACAATTTTTTATCCTTTGTTCTGGAAATACTTGTTCCTACTAC AATGTGGCCTGTGGGAACCATTCTAGAATTACATTCACAAATATGGCAAATGTCGCCGCTCGGATAATAATTTTTTTTCACCTAGTGGGATAAAGGCTTG GATGTTGTTTTTGTTCTGAAAATACTTGTGAACGGCTTCTCCACTTGCCCAATGTGTATATCTACCCTTCCCATACCCCACAAGGTGAGAGCCTCGTGCA TTGAGCCCTCCCTAGACCCCATTAGGTGGGAGTATCGTGCATTGGGCCACCCCATTTTATTTTGAAAATGGTTTTCAATTTTCTTTACAAAATTGTTTTG AAAACAAAAACACAAATCAATCAGAAACACAAAACAGTCAGGGCCTTAGAGAGGCTCTACCTGGGTTTTAATGTTTTATGCTGAGGGCAGTTGGATATAA CTTGTATGTTACTGTAATTTGTTGGTTCCATAAGCCTTCATCGAAGTTCAGTGACTCTTTTGACTCTGTCGTCCGGGATACCTTTTGTTTATTTATCACA TTCTTCATTTTGTTCATTTGTTGATGGTTTGGTTTTGCTTTAGGTGATTTATTCATCTTAACCTAAAAATGTTATAGTACATATATAGCATGTAGTGCCA TAGGATTCATTAGTTTTGTGAATGACTTATCTAAAGCCTGTTTTATTCCTTGGCCTGAAACCATTTCCTCCAATAGTTTTGTTTTCACTGAACTAGTCTC ACAGATAGATGATAAAATCACAAAAATTGTTACCGAGCAGCAGAAGATTGATGCCAAACGTGCTCATGACAAATCAGAAGTGGAACAGCTTAAGCAGGAC ATTGCTAATGCTAACAAGCAGAAGCAATTGGTTTCTAAAGCAATTGCAAATAAGGAGAAGTCACTTGTAGATGTCCAGAATCAGATTGACCAGCTCAAGG CTAGTATGGCAGTGAAACAAGCTGAGATGGGCACAGAGCTCATTGACCATTTAACACTAGAGGAAAAAAAGCTTTTGTCAGATTTGAATCCTGAAATCAA AGATCTTAAAGAGAAACTTGTTGCTTCAAAGGCCGAGCGTGTTGAGACTGAAACTCGGAAATCAGAGCTGGAAACTAATCTAACGACTAACCTTAGGAGA AGAAAGCAAGAGTTGGAGGTTGTAATATCATCTGTGGATGCTGATTTTTTGGATGATGATGCTGAATTGAAGGGTAAAGAAGAACTTAGTTCTGCTAAAA AATCGGTTGATGATGCAACAACGCAGCTTCGAGGAGTTTCTGAAAGTATAAAGGATAGGACAAGCCAAATTAAAAAGATCAAAGATGAAATGAATAAATT GAAGTCTTTGGAGGATGATTATGAAAGAAGACTTCAGGAAGAAGCAAAAGAATTAGAGCAATTGCTGAGTAAAAAAAATATCTATTCTTCTAAAGAAGAC GAGTATACCAAGAAAATAAGGGAATTGGGTCCATTGACATCAGATGCTTTTGAGGCGTACAAGCGGAGGAACATCAAAGATTTGCATAAAATGCTGCACA GGTGCAATGAGCAACTGCAGCAGTTCAGTCATGTAAACAAGAAAGCACTTGACCAATACATAAATTTTACAGAACAACGAGAAGAACTTCAGAAAAGGCA AGCTGAACTTGATGCAGGAGATGAGAAAATTAGAGAGCTAATATCAGTACTAGATCAACGGAAGGATGAATCAATTGAACGGACTTTCAAAGGTGTTGCT AGGCATTTTCGAGAAGTATTTTCGGAACTTGTCCAGGGGGGCCATGGCCATCTGGTTATGATGAAGAAGAAGGATAATGATAATGATGATGATCAAGATG AGGATGGTCCTCGTGAAGCAAATCCAGAGGGGAGAGTAGAGAAGTACATTGGAGTGAAAGTAAAGGTCTCTTTCACTGGACAAGGAGAGACACAGTCCAT GAAGCAGTTGTCTGGGGGTCAAAAAACTGTCGTTGCCCTTACACTTATCTTTGCCATACAGCGATGTGATCCAGCTCCCTTTTATCTATTTGATGAGATT GATGCAGCACTGGATCCACAGTACCGAACTGCTGTTGGAAATATGATCCGACGCCTGGCAGACATAGCAAACACACAATTTATCACAACAACGTTCCGCC CAGAGCTTGTCAAAGTTGCTGATAAGATATATGGAGTGACTCATAAAAACAGGGTCAGCCGTGTTAATGTCGTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_46022; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_93226
| Blastp | Structural maintenance of chromosomes protein 3 from Arabidopsis with 68.75% of identity |
|---|---|
| Blastx | Structural maintenance of chromosomes protein 3 from Arabidopsis with 69.88% of identity |
| Eggnog | Required for chromosome condensation and partitioning (By similarity)(COG1196) |
| Kegg | Link to kegg annotations (AT2G27170) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019434196.1) |
| Pfam | SMC proteins Flexible Hinge Domain (PF06470.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |