Ll_transcript_92647

• Id Trinity: FTRINITY_DN54845_c1_g4_i1
• Name Transcript: Ll_transcript_92647
• Sequence: CTCCAATTTATTTCTTTCTATATTCATTTCATGATTTCAACAAAGTTTAGTTTTATATGAATCAAAATCTTCAAATTGAATAAGCTGATTTTTGACCCGG ATCGTGACGGGTGAGTTTAAACGGGTCGAAGCTTACCCATAGAGTGAGTTTACTCATCAAGTTTTTCTCTTCTCCCATTTCTGCAGCCATAACAAAGAAA CATAACAATGAGTGATATTCGAAAGTGGTTCATGAAGTCTCATGCCAAGGTCAATGACAGTGCTTCTAAGCCTTCTTCCGATGATAAAGTCCAGCCTCAG AAAACGGCGCCTGGAGCCGAAGAAAGTTCAGGTTCCGGGAGGAGGAAGACTAGTAAATATTTTGATAAAGACAAAGAAAAGGTGAAAGAAGAGAAAGAAA CACCGAAGCTCCCTGCTAAAAGAAAGAATGTGAAAGACAGCGAGGAATTACAGATACCCCGCCCTTCAAAGAAAATTCATGAAGCGGATGAAGACAAGTC TGCCATGCCCACATCTTATAACAAGCTTGCTGACTCCACTCCTGCAAAAAAATTAAAGAGTGGATCAGGTAGGGGGACCCCCCAGAAATCTGCAGAGTTG GAAGAAAATGATGAAGACGACGACAAAGATAATGTTACTCCAGCTAAATCTGGTGGTAGGGGTCGGGGTGGACGAGGGGCATCAACACCATCAACTGGTG GTCGGGGTAGAGGGGGTGGTAGGGGTGGATTTATGAATTTTGGTGAAAGAAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAC CTGTTTAGCTGGCTTAACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCCGAAGACTTGATTAAACGCCATGGTGGCCGTGTTACA GGATCAGTCAGCAAGAAAACAAGTTATCTGTTATGTGATGAAGACATTGGGGGACGGAAGTCTGAAAAAGCCAAAGAGCTTGGGACTTCCTTCCTCACAG AGGATGGATTGTTTGATATAATTCGTGCATCAAAACCTGTTAAAGCTCCTTTGAAAGAAGAACCCAAGAAACCTCTGGCTAAGGCTGTTGCATTAGCATC CCAATCAAAAGGTCCTCCAAGAGTAGAAGCTAAGGTCTCTCTATCTTTGTCCTCGCCTTCTACCCAAGCCAAGCCAAAGACAGCAACTATTACTCAATCT TCTTCGACGTGGACAGATAAACATCGACCTAAAAGTCCTAAGGACATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAAGCATGGA ATGAACAATTCCTCGACACTGGTAGTAAAAAAGTAGGTAAAAAGCAAACTGGATCTGGTTCCCAAAAAGCTGTCTTGTTAAGTGGAACGCCTGGCATAGG AAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGGA AAAGGAATTAGTGGAAGCACTAAGAATTCTGTCAAGGAACTTGTAACCAATGAGTCCCTTGGTGCTAATATGGATCGGTCAAAGCTTTCTAAAACTGTGC TCATTATGGACGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCAT TTGCAATGACCGTTACAGCCAAAAACTAAAAAGTCTTGTGAACTACTGTTTGCTTCTTAGTTATCGAAAACCTACAAAGCAACAGATGGCAAAGAGGCTG ATGGATGTTGCAAAGGCTGAGGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAACTCGCAGAAAGAGTTAATGGAGATATGCGCATGGCAATAAATCAGT TGCAATATATGAGCCTCTCCATGTCAGTTATTAACTTTGATGATATCAGGCAGCGCTTTCTTAAAAATTCAAAGGATGAAGATATTTCGCCATTTACAGC TGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAATTGAAAATGGATGAGAGGAATAATCTTAGCATGAGCGATCCTGATCTTGTTCCTCTTCTTATCCAG GAAAATTATATTAATTATAGACCAAGCGGGGCTGGTAAGGATGACAGTGGTATAACACGCATGAATCTGATTGCCCATGCTGCTGAGTCTATTGCTGATG GGGATATAGTGAATGTACAAATTCGAAGATATCAACAATGGCAGCTTTCTCAAACTAGTTCTGTCGTATCGTGTATAATTCCTGCTTCATTACTGCATGG GCAAAGGGAAATACTCGAACAGGGAGAACGGAATTTTAATCGGTTTGGTGGGTGGCTTGGGAAGAACTCGACAAGGGGTAAAAACATGAGACTTTTGGAT GATCTTCATGGCCACATTCTTGCTTCTCGTGAAACTAGTCCGGGAAGGGATACTATACGCTTGGAATACCTGACTCTGCTTCTTCAACACCTGACAGAAC CACTGAAAACCCTGCCCAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACATATTCTATCACTCAGGAAGATTTTGACACTATTGTGGAGTT ATCAAAATTCAAGGGTCATCCTAATCTTCTAGACGGCATACCACCCGCCGTCAAGTCAGCCTTGACAAAAGCATATAAGGAGCAAAGCAAATATCGGATG GTGCGAGCTGCAGATCAAGTCACTCTTCGGATGGTGCGAGGTTCAGATCGAGTCACTCTTCCTGAAATAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTA TTCTAGAACCAGCTGATGAAGGAATGGAACAAGGTGAAGGTGAAACCTTGGACGAGAGTGAAGATGAGAACACCTCTGACACTGAGGAGTTGGGCCCTAC CGCTGGGGAGAAACTGCAGTCGGAACTTCAAAGCTTGAATTCAAAAGCCGTTCAAGTACAATTGGAGTTGAAGGGAACAGGCAATTCGAGTTCGAAGAAG CCATCTGCTGGTAAAGGAAAAGGTGCTTCTGCATCTGCACAAAAGGCTGGCCAAACATCAAAAAGAAAAAGGTGAAGGAATATGCACACTAATGGGAAGA TTTGTATATGGACCTTGTTCTTCATGTAATTGATGTTAGGCATTTGTAATAATTTTTGGTTGACTTTTACTGAATTTTCCAAGGAGAGTACCGAGAAACA TGGATTGGTTGTGTTTTTTTTAATGGAACATGGGTTGTACATGACGATGATCCCTGCTAATTTGGGCAACATATCTCATCGCTGATTGAGCTGCAAACTT CCCTGTGGGACATATTGCGAGCAAATTCCAAATTATCACTATCTCCACTCTTCATAACAAAGGTGTGTGTCCGTGTGAAACTATTCTAAGGTATATAAAA CTATTCAAAGTTCTCAATACCTTAAAAGTTTGGGATGATTAACCCTGG
• Tissue: flowers
• Gene name: LI_gene_46216;
• Additional information: details;

Expression of Ll_transcript_92647

FPKM

• FPAB: 8.7
• FPNAB: 12.5
• LF1: 9.3
• LF2: 8.1
• LF3: 10.7
• LF4: 11.3
• UF1: 7.6
• UF2: 8.1
• UF3: 10.9
• UF4: 9.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_92647

• Blastp: Replication factor C subunit 1 from Arabidopsis with 66.4% of identity
• Blastx: Replication factor C subunit 1 from Arabidopsis with 65.96% of identity
• Eggnog: replication factor c(COG5275)
• Kegg: Link to kegg annotations (AT5G22010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413096.1)
• Pfam: BRCA1 C Terminus (BRCT) domain (PF00533.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;