| Id Trinity | FTRINITY_DN54845_c1_g4_i5 |
|---|---|
| Name Transcript | Ll_transcript_92663 |
| Sequence | CCATTTTTCACTCTCTTCTTCGTTTTTTAACTCACTACTCTTTTCACCGTTCCATCTTAACTAACCGTTACACTTTTAAATTCCTTACCTAACATTTTAG GGTTTTTCTTTGTTTTTTTTATGTTTTTCTAATTACAGAGTGATATTCGAAAGTGGTTCATGAAGTCTCATGCCAAGGTCAATGACAGTGCTTCTAAGCC TTCTTCCGATGATAAAGTCCAGCCTCAGAAAACGGCGCCTGGAGCCGAAGAAAGTTCAGGTTCCGGGAGGAGGAAGACTAGTAAATATTTTGATAAAGAC AAAGAAAAGGTGAAAGAAGAGAAAGAAACACCGAAGCTCCCTGCTAAAAGAAAGAATGTGAAAGACAGCGAGGAATTACAGATACCCCGCCCTTCAAAGA AAATTCATGAAGCGGATGAAGACAAGTCTGCCATGCCCACATCTTATAACAAGCTTGCTGACTCCACTCCTGCAAAAAAATTAAAGAGTGGATCAGGTAG GGGGACCCCCCAGAAATCTGCAGAGTTGGAAGAAAATGATGAAGACGACGACAAAGATAATGTTACTCCAGCTAAATCTGGTGGTAGGGGTCGGGGTGGA CGAGGGGCATCAACACCATCAACTGGTGGTCGGGGTAGAGGGGGTGGTAGGGGTGGATTTATGAATTTTGGTGAAAGAAAAGATCCTCCACATAAAGGAG AAAAGGAAGTCCCTGAAGGTGCTCCTACCTGTTTAGCTGGCTTAACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCCGAAGACTT GATTAAACGCCATGGTGGCCGTGTTACAGGATCAGTCAGCAAGAAAACAAGTTATCTGTTATGTGATGAAGACATTGGGGGACGGAAGTCTGAAAAAGCC AAAGAGCTTGGGACTTCCTTCCTCACAGAGGATGGATTGTTTGATATAATTCGTGCATCAAAACCTGTTAAAGCTCCTTTGAAAGAAGAACCCAAGAAAC CTCTGGCTAAGGCTGTTGCATTAGCATCCCAATCAAAAGGTCCTCCAAGAGTAGAAGCTAAGGTCTCTCTATCTTTGTCCTCGCCTTCTACCCAAGCCAA GCCAAAGACAGCAACTATTACTCAATCTTCTTCGACGTGGACAGATAAACATCGACCTAAAAGTCCTAAGGACATCATAGGGAATCAGTCACTTGTATTA TTACTAGCCTTCCATATCATATTTTTTTGTGGTCGAATTTTGTTTTTATATATATACCTGTATTTGGTAAATCATTTTGCATTTTCTTAAATGTAATGAT ATACAGGTTTCACAGCTTCGAAATTGGTTGAAAGCATGGAATGAACAATTCCTCGACACTGGTAGTAAAAAAGTAGGTAAAAAGCAAACTGGATCTGGTT CCCAAAAAGCTGTCTTGTTAAGTGGAACGCCTGGCATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAA TGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGGAAAAGGAATTAGTGGAAGCACTAAGAATTCTGTCAAGGAACTTGTAACCAATGAGTCCCTT GGTGCTAATATGGATCGGTCAAAGCTTTCTAAAACTGTGCTCATTATGGACGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTA TTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAAAAACTAAAAAGTCTTGTGAACTACTGTTTGCTTCTTAG TTATCGAAAACCTACAAAGCAACAGATGGCAAAGAGGCTGATGGATGTTGCAAAGGCTGAGGGGCTTCAAGTTAATGAGGTGAGTACATGATGTTATTAC ATAGTTCTTTCTGGAATTTTAACTGTAAATATTGTCTGGGCTCTGGACCGAGGATAGCGAACTACTTTGAATCATTGATACCTGTTTCTTACAAAACTGT AATTTTTTCCATTCATATTGACCAACCTCTTTTATTTAACCACTCATCTTGATTGTTTAAGATTGCTCTTGAGGAACTCGCAGAAAGAGTTAATGGAGAT ATGCGCATGGCAATAAATCAGTTGCAATATATGAGCCTCTCCATGTCAGTTATTAACTTTGATGATATCAGGCAGCGCTTTCTTAAAAATTCAAAGGATG AAGATATTTCGCCATTTACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAATTGAAAATGGATGAGAGGAATAATCTTAGCATGAGCGATCCTGA TCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCGGGGCTGGTAAGGATGACAGTGGTATAACACGCATGAATCTGATTGCCCAT GCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAAATTCGAAGATATCAACAATGGCAGCTTTCTCAAACTAGTTCTGTCGTATCGTGTATAA TTCCTGCTTCATTACTGCATGGGCAAAGGGAAATACTCGAACAGGGAGAACGGAATTTTAATCGGTTTGGTGGGTGGCTTGGGAAGAACTCGACAAGGGG TAAAAACATGAGACTTTTGGATGATCTTCATGGCCACATTCTTGCTTCTCGTGAAACTAGTCCGGGAAGGTAAAAATATGAGACTTTTGGATGATCTTCA TAAACTCAAGTTTTTTCACTTTGTTACCTTTTCTCTTGCGTCTAGTTTTATTTCTTCTGGAGATTTATTGAATGTTTCTGTCAATAATTACAAATTATTT GTAGGTCTTTCTTGACTCTTGATGTTTTGGCAAGATTTGGTATGGAAACCAATTGCAGCTCAAATCCGTTGGATTTGCTCAGTTGTCAATAAATTCTTGA TTTTTAATTGTGTATTGAAACTAAAAATAAATCTTAGGCACTTTCAACTTATGACTAAGAATCCGGGATACAATTTTGTCTGGTCTGTATGTGCTTACCT ATTAGGTTATGGAAGTTCCATGCCAAACAGCATTTTGGGAAGCAAAGATCTCCATTGCAATTATGTCCAGTAGACTTGTTATAATCATGCTTCATTAAAT GTGCAGGGATACTATACGCTTGGAATA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_46216; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_92663
| Blastp | Replication factor C subunit 1 from Arabidopsis with 58.47% of identity |
|---|---|
| Blastx | Replication factor C subunit 1 from Arabidopsis with 59.89% of identity |
| Eggnog | replication factor c(COG5275) |
| Kegg | Link to kegg annotations (AT5G22010) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413096.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |