| Id Trinity | FTRINITY_DN54856_c2_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_93021 |
| Sequence | ATGATATTAAGCTAATGTTGAAGATATGAATTAATGAACCACACTCCCTCAACTTGTTATTCTCACCATTCTCATCCATGACCCTCTGAACTCAACTTCA CTTCACTTCCTCATTCATGGCTATTCGTGCCTTCAACCCTCGCTACTCCCTCTTCTCTTCTCCCACTCCCACTCTCTCCTCCTTCCTCCACCGCCGCCAC ACCGTTCCCCGCTGCTTCCGCTCCCTTCCGTTCCCTCCTCAACCGCCGTTCCTCTCCGTTTACCGCCGTCAAATTCGCTCCGTTCATGGCCTCTTCGATA GCGTCATGGAGGAGCTCCAGGCCATGCGCAAACGCAGGAAAATAGTTTCCAATGCTTCCAAGTCCATCATGGGATTGTTGAATGAAGAACTTGTGGAAGA TAGGATTGTCAACCGTTCATTGCAAAAAGGGTTGCTTTTGGAGTTCAAGGGGGATTCTAATAGAATATTGTTAGTGGTTTCTCAAAGACCCGATGGCAAG AAGAAGTGGATGGTTTCTGATCAGAATGGTGTCACTTCTTCCATTAAGCCACGTCAAGTAACCTACATTGTTCCTGGTATTCACAATTTTGACCCAGCAG ATATTGCAGATTTTGCTCAGAAAGCTCAGGACAACATGGATTTGTCACTACTTGAATTTGCTTGGGCTGAGCTCCTTGAAAAGAATAAATCTGTGACAGT TGAAGAGTTAGCTGAGATGATTTTTGGCAGTGCTGAGCCTCTTGAGAGCTATTCTGCTCACATGTTGCTGTCAAAAGATGAAGTATACTTCACTGTGCTT GAGAATAAAGGACCTTGTTCCATCTATGGACCTCGACCTAGTAAGGAGGTTGAGGAGCTTATTCGTAGGAAACTTGCAAAAGAAGCTTATGAGAAAGAAT TTCAGGAGTTTATTGAATTGCTGGCATCCGCAAAATCGATGCCTTCACAAGATAAACCTCCTAAATCTTCCTGGATGGATGAGGAGAAAATTCGGAGTAG AATTGAGTCACTTGAAGCATATGCTATTGATGCATGTAAAAATGACGAACAAAGAAAAACAGCTGAGATGACACTTACGGAAATAGATCTGGCAAAAACA GCTTCTTCAGCTGTGAATCTCCTAGTAGATATTGGGTATTTTCCTGTACACGTCAATCTTGATTTGTTGAAGTTGAGTATTCCCACTGATCATTCAGCTG AAAACATATCAGTTGCTCAAAGTCTTCTATCAAACTCATATGATCAAGATGAGATCAATAGGAAGAATCTTACTGATTTAAAGGTTTATGCCATTGATGT TGATGAGGCTGATGAGCTTGATGATGCTCTGAGTGCAAAGAAGTTGCAAGATGGTCGAATTAAAGTTTGGATACATGTTGCAGACCCAACTAGATATGTT GAAACTGGGAGCATTATGGATAGGGAGGCTATGAGAAGAGGAACTTCTGTTTTCTTGCCCACTGCCACATATCCTATGTTTCCAGAAAAGCTTGCGATGG GGGGTATGAGTTTGCGACAAGGAGAGCTTTGTAATGCTGTTACTGTATCAGTTGTGCTGCATAATGATGGCAGCATTGCAGAATGTTCAGTGGTTAACTC AGTGATTAAACCAACATATATGCTGACATATGAGAGTGCATCTGAGCTACTGCATTTGAACCTGGAGGAGGAGGGCGAACTCAGAATTTTGTCCGAGGCT GCAAACCTTCGTTTAAATTGGCGCCGTCAACAGGGTGCTGTTGACACAGCAACATTAGATACTCGCATTAAAGTGTCTAATGCAGAGAGTGAAGAGCCAT TAATAAATATTTATGTCGAAAACCAGGCAGACCCAGCAATGCGACTGGTCTCTGAAATGATGATACTCTGTGGTGAAGCCATGGCCACATTTGGGTCCCA TAATGATATTCCTTTACCCTACAGGGGACAGCCCCAGTCACATATTAATGTTTCTGAATTTGCACACCTTCCAGAAGGGCCTGTTAGGAGCTTTGCCCTG GTCAAAGTAATGCGTGCTGCACAACTTGATTTCAGGAAGCCAGCACGCCATGGGGTTTTGGGAATTCCTGGTTATGTTCAATTTACATCTCCCATCCGTA GATATTTGGATCTTCTGGCTCACTATCAGGTAAAGGCATTCCTTAGGGGTGAGCCTCCACCATTTTCACCCGGCAAGCTTGAAGGAATAGCAGCAGTAGT AAATATGAAATTTAGAGCAGCGAGGAAGCTCTGCAGCAGTAGTCTTCGATACTGGATATTGGAATATTTACGAAGACAACCAAAAGAGAAAATATATCGA GCATTGGTACTTAGATTTATTAAAGATCGAATTGCAGCTCTATTGTTGGTTGAGGTAAGCAGCTAATGAACCTATTAGATAATCTGTTTTGAAGTGCATA TCAATTGTTGATTGTCTCACTGGTTAATCACAGCATTGTATTAAACATGTAGATGGGATAGCTGCCTTAAAAGAGCAGCATTTCTGATTAGTTGGGAATG ACTTAATTTTTTTTAGATGAATAGTGAAACATGCCGAAGTGGACCCTAAGTGCTATGACTAAAGTTGTTGCCGCGTGAATAAGAGGTTCATAGGTTTGAA TCTGAAATCTGTCTCTTGTGAATGCGAGGTAAGGCTGTCAACTGTAGACCCACATAGTTGGTCCAATCCTTTCCTTTGGATCCTACATGTTGGGGAGTTT TTTTAGCCCTACATTTAGGGGCGGAAATGAGATGAGTCGAACTTGGCTCAGCTCAGCTCGACTCATTAAGGATCGGCGTGAGTCGAGTTTCTATCCGAGA TTCCGAGTTCAATGTCGAGCTATTTTTTCAGCTCAAGTTCGGCTCACAAAGAAGCTTAAAAAACTAGCATTTCGTTCCAACCAAATGCTCTACTGAACCA CAAAGCGTGTAAATTGCCAAAATTTTAGCTTCCTGCCAGAGATAACCCCCCTAAACTTGATCCTCAGGAACATTTTAAATCTCTGAGGCAAACCTACTCT ACACCAAAAAACACCAACCTTATTCTGAAGAGAGGAAGCCACTAAGCAATGAAAAAACAAATGAGAACCAGTTTCTGAACTAGATCTCCACATTACCCAC TGGTTAGGAGATAAAGTAGTAGGAGGTCTTCGTACAAATCATTTTCTGTTAAGCAGAACTGTCCAAAGGATTTGCCCTAGGGGGAGAAATCTAGGAAGCC TTCTAGTTATTGAAGTGTCCCATTGTTGGACACATTTCCAAAACTGAAACTCCTCCGAATTGTGTAAGATACTCCTCTGAAGGTCTCCAATTAAAAAAAT GTTTTTTGTTGGGTCAGACTCCTGACAGGCATGGCTTGGACTCTTAGTTGACACCCCAAAATAGCTAGACACCTTCAAGGACACTTATGCAACTGAATCT CACATATAGAGCCCGAGTCTCAGTAGAGGCCATCCCGATACATCGTTTTTGGTGTCAGCTGCTCCACAGGATTGACTACATATCTATTGTCTTGGCATCC TATATTTTTTACATTGTCTATATCCGAGTGTGTGTCGTACCTGGTGTTGAAGATGGAGTTCATACTTGATTTCTATACAGACTTATCCAAAAGAAAAGAG ACATTAACCATCCGACCTATTGGAGTGCAAATCTTACATATTATGCATACTTCCTTGCTTGACCATTTTACTTGGTTTTTTTCCTGTGAAAAGCTTATTA GAATCATTGTTTACGCCAATGGCCCCATGCCCAGTTTTTACAAGATTGTTTCGTTTTGTTTGGGAGGAAATTGAATTTTGTATAGCTTGATCAAAGTGTT TTCCCCGATACCAAGGTGCATATTTGATAACTGAGCACCTGGTAAAATTATAAATATGTTTCTTATATGTAATTGAAAAGATTGACATTGTCAAACCAGT ACAGAAATTAAAATGATGTTATAATGTTCTAGTATTGTTTTACATAAATGTGTTTTATATATGCCCTCCCCTCAGAGGTATTGCTTTTACTAGTGTTTTC AGTCCATGTTTAATTTCGTTAAAAAGGCGCAACTTTGGCACCTGGTTGATTCTCATTTTGCAGGTTGGATTTCAAGCTTCTACCTTGGTCTCTGTTGGAA CTCACATAGGGGATGAAATATTAGTTAAGGTCGAAGAAGCACATCCTCGTGATGATATTATTTTTCTGAAGGAGGTCATAAAAGGTTGACTTAAGAGTTA AGAAATGTTTATGAGAAAGGCTTCCAATGTAAAAATTATTCAAAAAGGTAATCAACTTTCTATGCATTCCTCCCAATTCTATATTTTTGTCAACGACAGC GAACCAAACCGTCCTCACTCAGCTGGGCGGCTAGGATGCTCCCTCATCTTTTGGCATCGAAGAAATATCACGCTTCACCGGAAAAATCTCAACCTTTTAA ACTTTGTCAAGCTGTTCAAATTTTGTAGTACCATTCTGGCAGAGAAATTCAGGATAGTTCTAGCCAGCATATCCAACCTTCATCACTCCGGCAGTGTACA GTCCTTCTCATTGTATCTGATCATACGGCGGCATAAAGTTAGCAGGTTTTCTCCCTCATAAGCGAGCAAGATTTGTCGGTTCCGTTGATTTGGTAAGTAT TTCCTTGGCATGAGCTAGTTATAGTAATTTTTCACCTTTTCTACCTGAGAATTCATGGTTAAGATTTTATTTCATTAATTTACTTTCTTGTATATGCCAG GCTTTGCAACTTTACATAAATATGTAATTGAGTTTCATTATTGTAATCTTACACACTTTGTGCCAAAAGATATAAGGATCTGAATTGCAAGTTGCAATAC AGGGTCATATGAAGAGACATTTATAACTATAATTTATTATGAAGAGGATATGAGGGAGTCGACAAGTGTTGGAATCCGT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_46314; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_93021
| Blastp | Ribonuclease II, chloroplastic/mitochondrial from Arabidopsis with 63.93% of identity |
|---|---|
| Blastx | Ribonuclease II, chloroplastic/mitochondrial from Arabidopsis with 67.96% of identity |
| Eggnog | 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs (By similarity)(COG0557) |
| Kegg | Link to kegg annotations (AT5G02250) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464581.1) |
| Pfam | RNB domain (PF00773.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |