| Id Trinity | FTRINITY_DN54934_c0_g3_i3 |
|---|---|
| Name Transcript | Ll_transcript_103232 |
| Sequence | GCTTAACCCAAATTGCGATTGATATTTCCTGTATTCATAAACCAATTTCACTTAATTGCCCGGATAACGTTAATTGCTTTTTCCTATCCTCTGCCTATCT ACTGTTCGATAAAATGCCTCTTCTTACCATTCATTTCACTTTAATATTTTTTGGATAGGTACATTTCACAGTGCCCACAAAACCAACTTATGTTGTTTCG ATGAAAGGGATGATGAAATTTGCAGGATATTCCTTCCCATTTTCAATTCCTCCCATCACTTCTATTCTCACTCTAAACACTTGCAGATTCTCTAATAGTA ATTTGTGTAGGCCAATCTTCTTTTCTGCTTACACTCAGAAACAATCATATCGTAAATCTCAATCTGGGGTTCTTGCAAAATGCTATCTTCCTCCTTCATT TAGTGTTGCTCCAATGATGGACTGGACAGACAATCACTATAGGACTCTAGCACGCATCATATCAAAACATGCCTGGCTTTACACTGAGATGGTTGCTGCT GAAACAATTGTTCATCAAAAGGAAAATCTGGATAGGTTCTTGGCATTTTCTCCAGACCAACATCCCATTGTGCTTCAAATTGGAGGGAGTAATATCGAAA GTTTGGCAAAAGCAACTGAACTTTCTAATGCTTATTGCTACGATGAGATCAACTTAAACTGTGGATGTCCTAGTCCAAAAGTAGCTGGACACGGGGGCTT TGGTGCGAGTCTTATGCTTGACCCAAAGGTTAGAAAATCACTTTTAGTTAAACATGACCTGAAAACAGATTGAATATATAAATATTCTTCATCAGTGTGC ATTATATAGAAATCTAATGTATAAAAGGAAAGTTTGTTGCTGAAGCTATGTCAGCAATTGCTGCCAACACAAATGTACCTGTCAGTGTCAAATGTCGAAT TGGTGTGGATGATCATGATTCTTATGATGAGCTGTGTAAGGTCCTTCTTTAAACATTCTTTGTCTGATAAAATTGAAAGGCTGTAAAGTTTGGATTCTAT GAATAGGTTTTGTCCTCCTCTTTTTAAAATTAATGGGAAATGATGTTACATTACACACACATATTTTTCTATATCCTTTTATCTGCCATGTCTCAAGTTT TTGCTACTAAGCGGTGCTCGAATAGTGTTTTGCATGTATAATGCACTAAAAATGGGGTATCCACTATTCAGCTGATTGGGTAGGTATCTGGTGGATGCTT ATCATCTCAAATCTTATAGTTGTTGACTTGTTACCATTAACTCAACTTCTACTAAATTGATCAAAGCCACATAGTGGCTTGCTGATAGGAGCCAGGAGTT TGAAGTGTGATAATTATGATTGCTATACTAACAATGGAGAAGTTTGAATTTGGTTGCTAACCATTACTAAAATGAAATAACATATAGATTGTAGTCGTAG AGATGTTTGTATCTAACATAATATACTTTAATGCAGTTGTCGGGGCCACTTTTGTAGTCTAACAGAATATACTTTATTTTGCATCTTAGGCTTGCAGGTG TCTCCATCTATTTGTCTTTTAGACTCCATCGTGCATTGCCATTTATGTGATTTGAATCTTATGTTATAATCTCTTCCATAAAAAAATTATTCTATGATTT TTGGCATTACATACTGCACATTCTGTTGTCTGGCAGGTGATTTCATCTGCATGGTTTCTTCTATATCTCCCACTAAGCATTTCATAATTCACTCAAGGAA GGCACTGCTCAATGGCATTAGCCCGGCTGAAAACCGGAGTATTCCTCCACTGAAGTATATGCTAATAAAATTTGATTTTTGTAGTCATACTATTATTATA TATAGAATTCCAGATAATATGTAATGTTTTCTAATGCAGATATGAATACTTTTATGGTCTCTTACGTGACTTTCCTAACTTAACATTTACAATCAATGGT GGCATTACTAGTGTTGATGAGGTGAGTTGCTGTCATGGTAATTGTTCTGTGTATTGAGACCTGATATACATATGAAATTTCCAGGACTGAAACTTTTCTC TTTAATTGCTGTATTGTTATGATGCTTCTGTTTTTCCTTGTTTTTTTTGGGATTCTGATTTCAGGTCAATGCTGCTCTTGAAGCTGGGGCTCATGGTGTT ATGATTGGACGTGCAGCATACAATAACCCTTGGCATATTTTGGGACACGTTGATACTGCTATTTACGGTGAACCTAGCACTGGTCTTACACGTCGTCAGG TACTTGAAAAATATCAATACTACGGGGACTCAGTGTTGAGAAAATATGGACATAGGCCGACTGTGCGAGATATCGTAAAGCCTTTACTCCATCTTTTCCA TTCAGCGCCAGGCAATGGACTTTGGAAGCGCAAAGCAGATGCTGCCTTTCGAAATTGCATGACAATCAAATCATTTTTTGAAGAAACTCTTGTTGCAATT CCTGATTCGGTATTAGATTCGCCTGTGGCTGAACCACCTCCGGGCCGTGAAAATCTTTTTGCTAACATAGACAGTTTGCTGCCTGCTCCATACAGAACAA GAGAAGAGATTGTTATTTGCGCTTAGGTTCACTTGTACACTACAAATCATTGGTGTTGTTGTCATTATCATTTCATTAAGTTTAATACAATGTAATTGCA CCAGACTTTGAAATGTAAGCAATTGACTTTAAAGTGTAATCCATTGGAAATTTGTAAATTGCAATTCCTTGTAGCGTTTGCTTTTGCTGTGGAAATTTGT ACTGAGTTCTAAACTGTTAAAAGTAGAATGCTGGGTGGCACATTT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_47074; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_103232
| Blastp | tRNA-dihydrouridine(20/20a) synthase from Thermus with 50.83% of identity |
|---|---|
| Blastx | tRNA-dihydrouridine(20/20a) synthase from Vibrio with 51.35% of identity |
| Eggnog | Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity)(COG0042) |
| Kegg | Link to kegg annotations (TTHA0016) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019412853.1) |
| Pfam | Dihydrouridine synthase (Dus) (PF01207.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |