| Id Trinity | FTRINITY_DN54942_c3_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_103296 |
| Sequence | TATAAACACAAACGCTGCCAGATTTTATTAATCTGAACCCTATGTTAACGCGTTCGCGGGAGAAGAAAGAAAGAAACCTCGGGAAACAGTTACAAAACTC ACCCCAATAATTCAGCAACACCCTCACTCCCAGAATCTAAACCCATCAATAGAAATTCCCAATTCTAAACACAGAAACAAAACCAAAACAAGAAAACCAA AATATCAAAAACATGTCTGATGCATTTTGCAGCGATTGCAAGCGAGAGACGGAGGTAGTTTTCGACCACTCCGCTGGCGACACCGTTTGTTCGGAGTGCG GACTCGTCTTAGAGTCCCACTCCATCGACGAGACCTCTGAGTGGCGCACCTTCGCCAACGAGTCCGGCGACAATGATCCTAACCGTGTCGGTGGGCCCAG CAACCCTCTCTTGACGGATGGTGGTTTGTCAACCGTCATCGCTAAGCCGAATGGTGGCTCCGGTGAGTTCCTATCGTCGTCGCTTGGTCGCTGGCAGAAC CGCGGCTCCAACCCCGATCGCGGACTCATCGTTGCATTCAAGACTATTGCTACTATGTCTGATAGGTTGGGACTTGTTGCAACCATCAAGGATCGGGCAA ATGAGATATATAAGAGGGTCGAAGATCAAAAGTCTAGTAGGGGAAGGAATCAGGATGCTTTATTGGCTGCTTGTCTCTACATTGCTTGCCGACAAGAAGA CAAGCCACGCACTGTAAAGGAAATTTGCTCTGTCGCCAATGGTGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATCGTGAAACAACTGGGTTTG GAGAAGGGTCAGTCTGTGGAGATGGGAACAATACATGCTGGGGACTTCATGAGGCGGTTCTGTTCCAATCTTGGTATGAATAATCAAGCTGTTAAAGCTG CTCAGGAATCTGTGCAGAAATCAGAAGAATTCGATATAAGTTTATTGTTGCTTCAAAGTGGAAAGTTGTTGGCAAAAGTTGTGTTAGTCATACAATGAAA CAAGGATATTAGCTTCAACTGGGCTTTAGAAACTATGTAGAAAATGTTGGTCGAATATAGTATTAGACTTCCAAGTTCCCCTTTGAGAAAAAGGTGAAGG GTGAGATTATGGATTAGAACCCTGTAGAGTCTACACAATAGTGTGCTGGATCTGGAGGAGAATTAGAAACTGAGCAGTGTTAGAAGTGGGAACTCCAAGG ATTTTGTAGCATTTGTGAGTAATCACTTTGTCATTCTCCATCCTTTTCAAAGCTTTTTTCACATCCAAATTTCAAATTCTACGGTAAAAGGTATAATTTT GATCTCCTCTTGTGTTTATTCTATCAGAAAGCAAATAATCATGTTCATCATTGAAAAACTTGTGAAAATAGTCCTTCCACCTTTTCTTAGTATCTTTTTC GTTCACTAAAACTTTTTCATTTTAATTTTTAATGCATTTCACGTGGTCCAAGATCTTCTTAAAGTTCAGGAGAAATCTAGAATAGTCTTACCTTTCATAT TTACTTCTCCTATGCCATAACCTCATGAAACCTACAAATCCTGTAGTGTCCCTCCTTACATGCTCGTTAAGATTCCTCCGAGGAAAATCGTTCCTCCTTA AAGTATTCCTTGACTATGCCTTCCAAATCCTCCCAAAATTTTATCTTGTGATGTTCCTCTAAACCTACCTGTCGTGCATAAGCACTGATCACATCTTTAA TGTGTCCTTTTTTGTTAGGTTATGATCCCATCTCATTCTTTTTACATCAACCACGTCCTTCTTCTATTCCTTGTCCACAATTATACCCGCCCTATTTCTC GATGTTGTATTACCAGTCTGCCACAACTTAAAATCTGAAACATCTAATTCTCTTATCTTTTCCCCAACCCACTTAGTTTCTTGCAGGCACATAAAATTGA TCCTCATCCTAATCATTTTATCTTTTTCCATTAATTTACTTATAGGAGTGCCTATATTCCATGTTTTGATTGGTAACCTAGAATGGTGAATTAGCTTCTT TACCTGCATCTATTCATGCAAATGTGGGATTCCTTGCATATTTTTCACTATATCAAAGCGGCAATGTTACAGCCCTTGCTCTTGATACTATATTTGGGCA ATACAACATGTTGCTTCTTGACAACGACCTAGCATTAACATTATCACATTGTTGATCCATATCATAGAGATTTGACAATGTTTTACATTGGTTGTCAATT GCATAACACAATGTTCACCTTTTATCCCAGCTTAGGAGCGACTATGTATAGCATCAATCACACATGTAGCTATAAATGATCATACTAATAACAACTTTTT AATCTTTCAGGAGGAGTCCAATATCAATTGCTGCAGCAGTTATATACATCATCACTCAGCTTTCCGATGATAAAAAACCTCTCAAAGATATATCACTTGC CACTGGAGTTGCAGAAGGAACAATTAGGAACTCCTACAAAGATCTTTACCCCCATGTTTCAAAAATAATACCAAATTGGTATGCTAAGGAGGAAGATTTG AAGAATCTCTGCAGCCCTTAGAGCAAAATATTACCATCCATATTGAACCTATTATATGTCATTGGAGCATATTGTTTTTGATGCACTAGACTGATTATAA AAACGGGGAAATTACACTAACCTCCCTCGAGGTTTCGGTTAATTACATTTACCTCCGCTCTTGTTTTAAAGAAATTACACTCATCTCTCCTAGAATGGCG GTGATTGTAATTACACTGCCCCCTTAAGCGAGATGAGTATAGCTTTATGAAACAAGAGGGATAGTAGATATAATTTCGTCAAACTTCAAGGGTAGACGGA ATAATCGGAATAATTTCCCAGGTAAAAAATGAACAAGCCTTTATCTTCTGTTTATTTCTATCAATTCTCCTGCAGCCAAGCAACATTTTTTTTCAGCCCA TTTTTCCTTCTTTTCACCCTCCCAATCCAAGTACATTTTTGGGAGCGAGGCACCATATAATGTAAGAAATTGCTATACTCTGGTGCAGCATTCAAGAGTT AATGTCATAAAAACATGAACAAAACTTTCATCAATTGAATTCTTTTTTAATACCCATAATGCTTTTTTGGCTTGAATGGAATAGTATTTGTAGGTGCAGC TTCTTTTGTACATTACATTTATATATTAGGAATATAACTAGTGCATTTTATTCTGCTTTAGATTCAATTACTTGATTGCCTAAGATGACAAATGGATAGA TTTGATCTGTATTCTAATGAATGGATAAAATCTATATAAATATATTTAAAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_47153; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_103296
| Blastp | Transcription initiation factor IIB-2 from Arabidopsis with 94.63% of identity |
|---|---|
| Blastx | Transcription initiation factor IIB-2 from Arabidopsis with 94.63% of identity |
| Eggnog | Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) (By similarity)(COG1405) |
| Kegg | Link to kegg annotations (AT3G10330) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453293.1) |
| Pfam | TFIIB zinc-binding (PF08271.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |