| Id Trinity | FTRINITY_DN54964_c2_g2_i13 |
|---|---|
| Name Transcript | Ll_transcript_103505 |
| Sequence | ATTTGAATGAATGAATGAATGAATGAATGAATGAATGAGAATGATAATACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGTTGGAAGAGTTCAT GAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAACATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAATGCCTCACCAGACG GAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACCCTACAACTAACATCCAATTCATCATTTTCTACAATTTCTATTGGGCTTTTTG GGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATATCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAAGCAAGTCGAAGAA ATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACTTTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAATAATAATAATAAGA AGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCTCTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATCGTAAACTGCAGAA CCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTCTATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCACCGTTCCTTCCACC CAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAACTATTTCTCAAGACATCATGTAACTCATATCATCTGCACTAATCTTCCTCACA CTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCAAACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGACTCTTGAGCTGGGT GCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTCCTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGCTTGTACAAATGCG CTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGGCAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTGGTTGAACTTAGCA GGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATAATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAGTTAGATGTGATGA AGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAACGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTGTATGTCAGTTACT ACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCAAGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCAACTCTGGCAGACC CTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTGGGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCTCATCTACTTCGTT TAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGTCCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTATCAGGAACCACCCT GTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAGGGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGTGGTTATGGTATTA GGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAAGAAGCAATAGGGT GTTCATAGTTGAATAATTTACAAAGAAGAATATTTTATTTCTCAACATATATTTTTGAGTAGCTGATCAATTTTATAGTATACTACATCGACATTGCAGC AAAGTGCAGGCTGTAAGCTGTGATGAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_47346; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_103505
| Blastp | DNA repair protein REV1 from Arabidopsis with 51.79% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 50.83% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421545.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |