| Id Trinity | FTRINITY_DN54964_c2_g2_i20 |
|---|---|
| Name Transcript | Ll_transcript_103520 |
| Sequence | CTTATGAATAAGGTTGAAGAAACAATGCAAATTATTATTAATAAGAATAGTATTATAAAGGAGAGGATATGCAGTAATAATAGTGTGGGATGGAGTGATG AGTGGGAAATAAGAACAAACAGTTGGTAGGCACTAGGCAGGAAGGAAATACTAGAGAGAGCAAATAGCCTTGAGCCTGTTGGCGGCAGATTGATCTATGG AATACTGCAGGAATCAAAATTGAAGAATGGATTAGATATTATTTAGATAGAGAATGGATGAATTAGACATTATGAATGAATAGGAATGAATGAATGAATG AATGAATGAATGAATGAATGAATGAATGAGAATGATAATACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGTTGGAAGAGTTCATGAAGAGTAG AAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAACATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAATGCCTCACCAGACGGAGTACCTC TGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACCCTACAACTAACATCCAATTCATCATTTTCTACAATTTCTATTGGGCTTTTTGGGCCCTAAC CTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATATCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAAGCAAGTCGAAGAAATGAGTTTA GATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACTTTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAATAATAATAATAAGAAGAGGAAGA AGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCTCTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATCGTAAACTGCAGAACCAATTTCA CACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTCTATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCACCGTTCCTTCCACCCAGGAGCTG CGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAACTATTTCTCAAGACATCATGTAACTCATATCATCTGCACTAATCTTCCTCACACTAAACTTA AGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCAAACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGACTCTTGAGCTGGGTGCCTTACCA ACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTCCTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGCTTGTACAAATGCGCTTTCTCAA GCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGGCAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTGGTTGAACTTAGCAGGCAACTCA GGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATAATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAGTTAGATGTGATGAAGAAGGGAT AGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAACGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTGTATGTCAGTTACTACTCCCTGC TCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCAAGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCAACTCTGGCAGACCCTAATTTTG TGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTGGGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCTCATCTACTTCGTTTAACAATGA AAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGTCCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTATCAGGAACCACCCTGTATTGTTG GACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAGGGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGTGGTTATGGTATTAGGGCTGGTA TGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTATAGTATACT ACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGATGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGATCCTAAACTTTTTGCTGCAGCA ATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATTGCCACTAGAACTGCAAAACCAA ATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACGAGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAGGGCATGTTTTACAGCAGAAATT GAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAATGATTTCCAAGGCTTCCCTGCAAAAGGATTATGGAGTTAAAACGGGGGAAATGCTGTGGAAT TATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATTCAGGAAAGTAAGTCTATTGGTGCTGATGTAAATTGGGGAGTTAGGTTCAAAGATATGAAAG ATTGTGATCACTTCCTAATTAACCTCAGTAAGGAAGTTTCTTTGCGATTGCAAGGTTGCGGAGTGCAGGGGCGCACTTTCATTATCAAGATCAAAAAGAG AAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGTGACTGTGAAAATTTGAGTCACTCAATAACGATTCCTCTTGCTACTGATAATGTGGAA GTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTCTACATAGATGTCAAGGATATTCGGGGTGTTGGCTTGCAGGTTTCAAGACTTGAAAGTGTAA ATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAATCATGGCTTACTTCAGGATCTGCAAGTATGGGAAAACAGAAATATCCTATGGGTAACAAGCA GAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTTGCAAGGGTCTTCAGTTCTAATAGACAATAACATAGTAAATAACCAAGCTAGTGCAGACACA ATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAAGTAATAAAGAATCTACCGCCAGAAGTATTCTCAGAATTAAATGAAATGTATGGAGGAAAGT TAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGAGTGCTAGATCTGTACGAAATTTGATTATAGAGCAAGAAGGCAAGTTTTTCTATGTTATATT ATTATAGCTGCTTTTACTAATACCCAAAATCATGCAGAAAAAGGCTACTTTTACTCATGATTCATGAATGTTTGGCAATGCCCCATATGCTTTTTAATTG TGTTTCTTAGCAGCTATAAAGAAGGATGCAGAACTTTCCTATTCTGACCGAATTCCTCAAAACAAGTTGTTACCAGAAAACAAGAAAGAAGCAGAGGTAG TTGAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_47346; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_103520
| Blastp | DNA repair protein REV1 from Arabidopsis with 54.7% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 54.64% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421546.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |