| Id Trinity | FTRINITY_DN54964_c2_g2_i5 |
|---|---|
| Name Transcript | Ll_transcript_103494 |
| Sequence | ATTTGAATGAATGAATGAATGAATGAATGAATGAATGAGAATGATAATACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGTTGGAAGAGTTCAT GAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAACATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAATGCCTCACCAGACG GAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACCCTACAACTAACATCCAATTCATCATTTTCTACAATTTCTATTGGGCTTTTTG GGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATATCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAAGCAAGTCGAAGAA ATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACTTTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAATAATAATAATAAGA AGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCTCTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATCGTAAACTGCAGAA CCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTCTATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCACCGTTCCTTCCACC CAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAACTATTTCTCAAGACATCATGTAACTCATATCATCTGCACTAATCTTCCTCACA CTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCAAACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGACTCTTGAGCTGGGT GCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTCCTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGCTTGTACAAATGCG CTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGGCAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTGGTTGAACTTAGCA GGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATAATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAGTTAGATGTGATGA AGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAACGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTGTATGTCAGTTACT ACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCAAGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCAACTCTGGCAGACC CTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTGGGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCTCATCTACTTCGTT TAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGTCCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTATCAGGAACCACCCT GTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAGGGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGTGGTTATGGTATTA GGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTA TAGTATACTACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGATGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGATCCTAAACTTTTT GCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATTGCCACTAGAACTG CAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACGAGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAGGGCATGTTTTACA GCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAATGATTTCCAAGGTTGTACTATCTCCTCACTTATTATATAGTTTCTTTGATTTG TTCTGCTATTCTTAAAGTTCAGTTGCTATTTCTTCTAAAATTTGTACTTTCTGCTTTCAGTCTATTATCAGTGTTCTTGTTTTGGTCTCAACTAAAGAGA ATACACACTTAGAGGAAAATATTTGATTTGTTGAAATTTTGGAAACAACTTAGAAGTTAGAAGACAATAATCATTGAAAATGAGAAGCTCATTGACGCAA TAAAATATAATGCTAGAATATACGGAAAAAACCTTGAAGTGCTTCAAACAATTATATTGCTACTGGGTTGATTTAGAGATCAATGCTTTGTCAATGGACA TGATTCATGATAGAGCTTAATGACGTCGTTCGGTCCATTTAACCGACCCAACCTATTGGGACTAAAGTTTGGTTGTTGTAAAAGCTCATTTACTTGCATA CTCTGTAGTTATGTCTCACTTTTATTTTGGGCATCTAGTTGAATAACATTTGTAATTTTCAAGATTCTGTAATTGCTTTCCTGGCGTCTGCAGGCTTCCC TGCAAAAGGATTATGGAGTTAAAACGGGGGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATTCAGGAAAGTAAGTCTAT TGGTGCTGATGTAAATTGGGGAGTTAGGTTCAAAGATATGAAAGATTGTGATCACTTCCTAATTAACCTCAGTAAGGAAGTTTCTTTGCGATTGCAAGGT TGCGGAGTGCAGGGGCGCACTTTCATTATCAAGATCAAAAAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGTGACTGTGAAAATT TGAGTCACTCAATAACGATTCCTCTTGCTACTGATAATGTGGAAGTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTCTACATAGATGTCAAGGA TATTCGGGGTGTTGGCTTGCAGGTTTCAAGACTTGAAAGTGTAAATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAATCATGGCTTACTTCAGGA TCTGCAAGTATGGGAAAACAGAAATATCCTATGGGTAACAAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTTGCAAGGGTCTTCAGTTC TAATAGACAATAACATAGTAAATAACCAAGCTAGTGCAGACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAAGTAATAAAGAATCTACC GCCAGAAGTATTCTCAGAATTAAATGAAATGTATGGAGGAAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGAGTGCTAGATCTGTACGA AATTTGATTATAGAGCAAGAAGCTATAAAGAAGGATGCAGAACTTTCCTATTCTGACCGAATTCCTCAAAACAAGTTGTTACCAGAAAACAAGCGGAGAG CGTGCAAGAAAATTAGTGGTAGGGATGGGGAGCGGGGGGAGTATTCCCTGCTCCTGCACCACTCCATCAGGGGAGTACTCCCTGCTCCCGCACTGGTCCA TTGCTATCCCTATTTGTTTTAAACAATTACTTTTTTCTGCTTGCTTTTGCCTAGCGTTCATTAAAATCTTCGCTTAATTTTTGTTAGGTTTTGACTCAGT TAGATCTGGCTTTTTTGTCTCATTTTAATATTTTATAACATGCCAATTTTAACTAAAAACATTCATATGCCAATTATATTTTATTATTTTGCTTTGGTTA ATTCTAATGGTTTAATTCTTTCATTAACCTGATCTAACAGGTCAGTATCCGAGTGTGTAGGTTATATGCTTGATTCAAATTGTTCTTACTCTAGCTTCTT TAATTAAGATTGTTCAGTTTGAAGTTTTAATAGGTTGAAAAGCACTTTAATATCTGAGTTTGAAGTTTTAATAGTTTTAATTTAGCAGTGCCATATCCAC TCCTTCAGTCCTTTGTGGAAAGGAAGGCTTCCATGTACAGTCAATTAAATTATAATCTCCTTTCGGTAGCTACTTTTATTTTTAGTAGCTTATTGGTTAT TGCTATTGATACTGGAGTTACAATATCTAGAAATCAATGAAACATTATTTTGTTTGCTTTTATTTGTATTTATTTTTCTACTTTTCAAAGAATAGCGTGT TTAGTTACATATATCATGATTAAATCCGAGGTAGTGCAGAAAGAAGCAGAGGTAGTTGAAGTAGGACCAGGCTCAAGGGATGGATCCTATGTCAAGGTTA CTCACATTTCAAGTTTTGAGAAAGATGATTTATTGCCTTCTTCTTTAAGTCAAGTGGATGCTTCAGTGTTACGACAATTACCCGAGGATTTGAAAGCCGC CATTGTTGAGCAGCTTCCTACACACAGGAGGCAAGAGTCTTGCTCCAATGCTGCTGTGCCCCCTCTTAGTGAAATCGGTCAGGCACCATTAGGTATTAAA AGTTCTGAGAATCATTCTGGATCAAGTGGTCACGTTTCGAGTGAAAGTCTATGGGCTGGGAATCCTCCACATTGGATTGATAAGTTTAAAGTTAGCAATT GCTTCATATTAAAGAGGCTTGCAGAAATATATTACAAATCAGGGTTGACTAGCACATTATCTTCAGTTTTGCACAAAATTATATATGAATTTCACGAGCT AGATCTAGCGCATCAGATTTCTGATGAAGCTATTAACATCACGTGTGAGCTACTGAAGCAGTATACCGAAGAGAAGATAGAAAGAGATATTGAAGAGATT TATATCTGTTTTCGGCTTCTGAAAAGGTTTGCAGCAAAGTCACAATTTTTCCTACAAGTGTACAATACTCTATTTCCGCACCTCCAGGTATACCTTTAAA CTACATCATCTTTCACCTATTGTTTATCAATCAAATGAAAAACACGAATGTGATATGCATCTTCAAATTTCTTCTCTATTAACAGTTAGTTCCTTTTATG TTCTTTAATTAATTTTCGTTTGACCTTAAGTATGTTGATATCCTATAGTACTTCAGTGGTCTTGTCAAACTTCGTGAACTGATTTTAAATGCTTGAATGA CTGTTCGTAAAGACTAAAGAGGATATGTACGGGGTTTGGGTTACTGTGACATTTGCCTGAGATTAGTAGCATCCTTTGGTTTTCCAGTTGCAACTTGCTG ATAACCTATAAAATTGCTTGAAGCAATACTCATGTTTTGATGGGCTTTGATGCATGTCTTTCCCATGTAAGCTATCATCTGGAGTTGTTATATTAGACTC GGATTTTGCAGGCAGCTGTTGATGACGCCTATGGAGGGACCTTGTTTATACCATCATAGTAGCATGCAAATAGTCAAAATCTCATCTAATGTGAGCAACT CAAGAAAAAGTCACCAGTTTAGCTGTATAATCTGGACAGATCACAAACCAATGGTTTCAATCCACTATGACATCCTGCAGAGTATGTTTGACTTTACCAT GATAGCTAAACTTTTTCTGCAGCAAATTTGCTTGTTCTGGTGGATGTTGTATTTAATTTCTAGTGATATTTTTTCAATTTTATGCTTCATAGTGTCTGTT TTCAAAATTACCATTTTGTTCTGAAATTGTAAGATCCTTTTGTGAGTTTCGTCACTCCTTGGTCCTGCAAGACCTTTTGTCTGATGTAAATCCTCATGTT AGTCTTTTCACCAGCATTAGTATTTTAATATGCCTTTGTGGCTGTGCAATTAATGTATAACTTCTTTATAGTTCATTTCATCCTTTTCATGATCTCTATG TAATTATAAAATTCCTCCATATTCTCAAGâBLAST |
| Tissue | flowers |
| Gene name | LI_gene_47346; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_103494
| Blastp | DNA repair protein REV1 from Arabidopsis with 54.56% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 54.72% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421546.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |