| Id Trinity | FTRINITY_DN55033_c3_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_68836 |
| Sequence | AAAACCACACGTCGTCGTTTCATTTCATTTTCATTCTTCTCAACACACACATTCTCTCTCTCTCTGCGTTTTGGAGCTTAGTAGTGTCGTTTTTCAGATC AGAGTTTTCTCGCCATGAACGGAAACAAAGCTATGGAAGACGCCAACGTTGAAGTGATAGAGTGCAACGAAAAAATGGTGTACATGTGGGGATACCTTCC CGGAGCTTCATCGGAGAAGATTCCGATACTCTCTCCGACGCAAGTTACGCTCTCTCTGCCTTCAGATTCGTGGAAAGATGTGTGCGGAGGTGGCTGTGGA TTCGCTATGGCAATCTCAGAGAAAGGGAAGCTCATAACGTGGGGTTCTGCGGATGATGAAGGCCAAAGCTATTTGGCTTCAGGGAAGCATGGGGATATTC CAGGGCCTGTTCAGCTTCCCACTGAGGCTTCAGTGGTAAAGGCTGCTGCTGGTTGGGCTCATTGCGCCTCTGTTACCGAAGAAGGTGAAGTATATTCATG GGGCTGGAAAGAATGTGTGCCTTCTGGAAAAGTTATTATTGATTTCACTACTGGGGGAAGCCTGCAAAAGGATGTTGCTGGGAAACAAAGCTCACCAGTA GCTGAACAAGATGTGAAACAGGAAGCCCACAAAGCTCAAACACTAGTAGCGGGTCGGATTCTCATCATGATAACAAGAAAGTTGGAGCAGATGTTGTGAA GAGAAGGAAGATCTCATTTGCCAGACCGGAATCTGACAGTCCAGCATCTGGAGATGAATTCTTTACTATGTCCCCTTCTCTTGCTACCCTTGGTCATGGG GTGAAAATTACCTCCGTTGCAGCTGGTGGGCGTCATACCTTGGCTCTGTCAGGTTCTATGAAGTACGAAGATATCGAAGGTTTTTGATGTAATGCAAGAC ACATGATGCATCATAATTTTTACCAAAGTTTTCAGATGTGGGACAGGTCTGGGGTTGGGGCTATGGAGGCGAAGGACAGCTAGGTTTGGGTTCTCGTGTA AAGATGGTATCATCTCCTCATCTCATACCTTGTATTGAGTCAGCTGCTGGGAAGGATAGGTCATCAACTTTTCAGCAAGAAAGCAGTGTGGGAGCTCAAG TTTCAAAGGTTCCTGGAAGTTATGTTAAGGAAATTGCTTGTGGAGGTCGGCATAGTGCTGTGGTTACAGATGCCGGAGCTCTTCTTACTTTTGGCTGGGG TCTCTATGGCCAGGTGAGTTTCCTGTTGACAAATTCTTTTTTTATATTTTTCATCTTCTGTTAGGGGAAAGACATTTATTTTTATTGCTATGGTTAAGTT GGAAATTGATCTTGCTGAAAACTCCAGTAGTGAAAATGGAATTTGTGATGCCTATTATTTATCATAAGTATTGTCTAAAGATGAAGAAGTCCCCTTAAAG ATTTTAGCATTCCTTTTCCAACCAAAGGCACCAGAATGCAGCAGATGCAGCATACTGCCAAAAAATTAGCTCCTTCTCAAAAGCCCTAACCTCTAAGTTT AATATGGAGAAGCTGATGCAATTCCTTAGGGCAAACTCAATCATGTCCATAGATTCTAAAAAGCTTAATCTAAAGAAAATTCCAAGAACAAGAATGCAAA AGAAGGTAGTTTCATTTTCTGAACTTGAACAACACATTACACACATTAGGAGATAAAGCAGTGAAAGCTCTACTGTTTTGTAGCATGTCTTTAGTGTTAA TGTTAAGAATAAAAGTCCAGACAAAATGTTTTGATCTAAATAGAAGCTTTGGACATTTAGATCCAAGTCTTTTTGAGGAAATAGTAGAACTACCAAGTAC CAACCAAGTCTTATTCTCACTAGTTGGGGTTAGTTGCATGGATCAAGCAATGCTATTAATATAAGCTTTATTCCCACTAGACGGGGTCGGCTACACATTA TAAATATAATGCTTTATTATAAATTATTTTCATTTACAAAGTTTATCTCTAAATCTTAATTGTTCCGCATATGGTTTTTCTTGTTTTTCCTATTTGAGAT GTTACACCACACATGTCTATAAAGATTTTGCTAAGTGCCAAATATTTTTTAAACCAAAAGGTTCCGATGAAGTTGGAGTTTCAGAAGTACCTTGGACTTC TCCTGACTTCAAGTGTTCCATTTCATTTTAAATGGCATATATGTTCTTATTAATGAATTTCTGAGGAGGAAGATTATCTCATTTAATGTTATGTATTGTT ATGAAGCACATGTGTAGGAACCGTTTCTTTTAAACCTTTTTGCATGTAAATTTACTCCAGTGTGGGCAAGGGAATAATGCTGATCAGCTGAGACCAACTC TAGTTCCTTTGTTATTGGGAACTGATGTGGGAAAAATTGCTGCGGGACTTTGGCACACATTGTGTGTTACAGAAGATGGTCAAATCTATGCATTTGGTGG GAATCAGTTTGGACAATTGGGTACTGGTAGTGACCAGACTGAGGTATGTTTTACCTTGCTCATTGGTCTACATATTTTGCTATCTCTAGAACAATGTTTA AATAATAGTCATGTGTTGGACGGGACACATGTTGCATTGAATTTAAATTCTATTTTGTCTAGAAATTTGCAGTAATCAGTATCAGTCTTATTTAAGCTTG CTGCAGTTGACATTATTTTGAAGTTGCATCGTTTTGTAAATTGCTTCTTGGTAGTAAAAAATGCAGTATTGTTTAATTGAAATCAGCTTCGCAACAATGG TAAGTTGTTGCTTAATGATCATGAAAATTCTAGAAATGGCCTCTCGCTTGTGGTGTAAGGCTATATATATCTACCTTACCCATATACCGTGCCCATGGCA TACAATTATGATGTAGTTTTATTGATTATGATTCATTAAAAATTCCTGTACCTACTGCCTAATATGTAGGTTATGTTCAGTCAGTCAATCCAAGATATTT AGTATTTAATGTGTTTTAAATCTTACAGATATTTTTGTTTTTAACCCCAAAATTTTCCTTATTTATCATTTTTGTATATCAGTGTTCCGGTGGATGATTT ATTTTCCTCCCTTTTTGTAATCATCTGGTCTTTTAATGAATTTCTTTTTTCTATCAAAAAATATTTTAGACCCTGCAACATTTTCCAAATTACTTCATGG AAATAGAAAAATAGGACTTTATGATGCTTCATGGGTCAGCTATGTCTCGTTTCTTAAATGAAAAATAAAGATATGTATCATTTTTGTATTGTTAACTTCA TAGATAATTGTATGTATATTGTGATTATCCATAGCTGTGCTCCAAATTAGTTGAAAATTAACTAATTAACTTTTTGTTGCTCAGACTTCACCTAGACAGT TGGAGGCTTCTCGTTTTGAGAATAAGCGTGCTAGTATAGTTTCTTGTGGAGCACGCCATAGTGCTTTGCTAACAGGTATGTTGCCATTAGAACTGAAGGG GAAAGTTTAAAGCCAATCTGACTGTGTATTTTGATGGTGCTATGACTTATTAAAATTGAATAGACCAAAGATATTTGTGCCAAGAACCATTCTATGGGCT ATGCAAATTTCACGACAATTTCAACTATGATGGACTGTGCACACAACTTGAAAGGGTAATTCCTTACCCATAGGGTGAGGGGATGCAAAAAAAGAATCGC ATACTTTCAATGTGGGATTCAAGTCCAATACCTTGCAATTGGATCCTAGTATCCCACCATGCTCTGCAACCCTGGCACCCATGCAGGCTGGCTGTGCACT AGCCCTTTGACTAGTCCCGGGCAAAAACTGCAATGCTGGCGTTGCCACCGGTGATGCTCTTCTCAGCCGTGAGATATGGTGGGTAGCTCTGATACCAATT GATAAGAAAACCTTGTGAGAGCCACACCACGAAAGATAGCCATCGTAGTTGGAGAGCCCAAGGCCTTATAAATCCCACACTATGGATTCAGGTGCGGTAC CTTGCAGTTGGATTATGATGGTCACATATTTACTTGGGGATGGAACAAATACGGCCAGCTTGGTCTGGGAGATTCTATTGACAGAAACATCCCTTGTGAA GTTCCTATTGCTGGTTGTCGACCAAGAAATGTTGCCTGTGGTTGGTGGCATACACTGCTGATAGTGGACAAATCTGTTTGACAAAATTTGTTATTAGCAT CAAGGTGGGTTGCACAGTTTTGATAGGTTACTGACTAGTCCTCATTTCATCAGTGGAATGCAGATATGTCCAAAATCACCAAACATGTTTCCTGGTTTGT TTTCTTCCCTTTCCATTTCTAGATTGTAGCTTAGCTGACATGTATTTATGGCTTTCTTACAGACAATAAGGGTTGCAATAGTGTTTATTATATGGTTGTA ATTTACAGCACTTGTTGCGCCCTTAAATTGAACCTTTGCGTGCAATGATGTGACAAAATATTCTAAGTTTTAAATGTGTCACTATACTGATGTTCTAAAC TCTTGAGAGTCTTAATTTGAGTCTTGGTGAGTGGAATACTAAAATGGTGTCAAAGAAACAAAAAAGTTTATAAGTTGGTACATTTGACCTTTTTTTATGA TGTAACTGACATACCTAATGGAAATAAGACTTTGTTTTTGTTTAAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_47961; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_68836
| Blastp | RCC1 and BTB domain-containing protein 2 from Mus with 30.77% of identity |
|---|---|
| Blastx | RCC1 and BTB domain-containing protein 1 from Mus with 51.72% of identity |
| Eggnog | regulator of chromosome condensation(COG5184) |
| Kegg | Link to kegg annotations (105670) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460943.1) |
| Pfam | Regulator of chromosome condensation (RCC1) repeat (PF13540.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |