Id Trinity | FTRINITY_DN55033_c3_g1_i19 |
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Name Transcript | Ll_transcript_68844 |
Sequence | AAAACCACACGTCGTCGTTTCATTTCATTTTCATTCTTCTCAACACACACATTCTCTCTCTCTCTGCGTTTTGGAGCTTAGTAGTGTCGTTTTTCAGATC AGAGTTTTCTCGCCATGAACGGAAACAAAGCTATGGAAGACGCCAACGTTGAAGTGATAGAGTGCAACGAAAAAATGGTGTACATGTGGGGATACCTTCC CGGAGCTTCATCGGAGAAGATTCCGATACTCTCTCCGACGCAAGTTACGCTCTCTCTGCCTTCAGATTCGTGGAAAGATGTGTGCGGAGGTGGCTGTGGA TTCGCTATGGCAATCTCAGAGAAAGGGAAGCTCATAACGTGGGGTTCTGCGGATGATGAAGGCCAAAGCTATTTGGCTTCAGGGAAGCATGGGGATATTC CAGGGCCTGTTCAGCTTCCCACTGAGGCTTCAGTGGTAAAGGCTGCTGCTGGTTGGGCTCATTGCGCCTCTGTTACCGAAGAAGGTGAAGTATATTCATG GGGCTGGAAAGAATGTGTGCCTTCTGGAAAAGTTATTATTGATTTCACTACTGGGGGAAGCCTGCAAAAGGATGTTGCTGGGAAACAAAGCTCACCAGTA GCTGAACAAGATGTGAAACAGGAAGCCCACAAAGCTCAAACACTAGTAGCGGGTCGGATTCTCATCATGATAACAAGAAAGTTGGAGCAGATGTTGTGAA GAGAAGGAAGATCTCATTTGCCAGACCGGAATCTGACAGTCCAGCATCTGGAGATGAATTCTTTACTATGTCCCCTTCTCTTGCTACCCTTGGTCATGGG GTGAAAATTACCTCCGTTGCAGCTGGTGGGCGTCATACCTTGGCTCTGTCAGGTTCTATGAAGTACGAAGATATCGAAGGTTTTTGATGTAATGCAAGAC ACATGATGCATCATAATTTTTACCAAAGTTTTCAGATGTGGGACAGGTCTGGGGTTGGGGCTATGGAGGCGAAGGACAGCTAGGTTTGGGTTCTCGTGTA AAGATGGTATCATCTCCTCATCTCATACCTTGTATTGAGTCAGCTGCTGGGAAGGATAGGTCATCAACTTTTCAGCAAGAAAGCAGTGTGGGAGCTCAAG TTTCAAAGGTTCCTGGAAGTTATGTTAAGGAAATTGCTTGTGGAGGTCGGCATAGTGCTGTGGTTACAGATGCCGGAGCTCTTCTTACTTTTGGCTGGGG TCTCTATGGCCAGTGTGGGCAAGGGAATAATGCTGATCAGCTGAGACCAACTCTAGTTCCTTTGTTATTGGGAACTGATGTGGGAAAAATTGCTGCGGGA CTTTGGCACACATTGTGTGTTACAGAAGATGGTCAAATCTATGCATTTGGTGGGAATCAGTTTGGACAATTGGGTACTGGTAGTGACCAGACTGAGGTAT GTTTTACCTTGCTCATTGGTCTACATATTTTGCTATCTCTAGAACAATGTTTAAATAATAGTCATGTGTTGGACGGGACACATGTTGCATTGAATTTAAA TTCTATTTTGTCTAGAAATTTGCAGTAATCAGTATCAGTCTTATTTAAGCTTGCTGCAGTTGACATTATTTTGAAGTTGCATCGTTTTGTAAATTGCTTC TTGGTAGTAAAAAATGCAGTATTGTTTAATTGAAATCAGCTTCGCAACAATGGTAAGTTGTTGCTTAATGATCATGAAAATTCTAGAAATGGCCTCTCGC TTGTGGTGTAAGGCTATATATATCTACCTTACCCATATACCGTGCCCATGGCATACAATTATGATGTAGTTTTATTGATTATGATTCATTAAAAATTCCT GTACCTACTGCCTAATATGTAGGTTATGTTCAGTCAGTCAATCCAAGATATTTAGTATTTAATGTGTTTTAAATCTTACAGATATTTTTGTTTTTAACCC CAAAATTTTCCTTATTTATCATTTTTGTATATCAGTGTTCCGGTGGATGATTTATTTTCCTCCCTTTTTGTAATCATCTGGTCTTTTAATGAATTTCTTT TTTCTATCAAAAAATATTTTAGACCCTGCAACATTTTCCAAATTACTTCATGGAAATAGAAAAATAGGACTTTATGATGCTTCATGGGTCAGCTATGTCT CGTTTCTTAAATGAAAAATAAAGATATGTATCATTTTTGTATTGTTAACTTCATAGATAATTGTATGTATATTGTGATTATCCATAGCTGTGCTCCAAAT TAGTTGAAAATTAACTAATTAACTTTTTGTTGCTCAGACTTCACCTAGACAGTTGGAGGCTTCTCGTTTTGAGAATAAGCGTGCTAGTATAGTTTCTTGT GGAGCACGCCATAGTGCTTTGCTAACAGGTATGTTGCCATTAGAACTGAAGGGGAAAGTTTAAAGCCAATCTGACTGTGTATTTTGATGGTGCTATGACT TATTAAAATTGAATAGACCAAAGATATTTGTGCCAAGAACCATTCTATGGGCTATGCAAATTTCACGACAATTTCAACTATGATGGACTGTGCACACAAC TTGAAAGGGTAATTCCTTACCCATAGGGTGAGGGGATGCAAAAAAAGAATCGCATACTTTCAATGTGGGATTCAAGTCCAATACCTTGCAATTGGATCCT AGTATCCCACCATGCTCTGCAACCCTGGCACCCATGCAGGCTGGCTGTGCACTAGCCCTTTGACTAGTCCCGGGCAAAAACTGCAATGCTGGCGTTGCCA CCGGTGATGCTCTTCTCAGCCGTGAGATATGGTGGGTAGCTCTGATACCAATTGATAAGAAAACCTTGTGAGAGCCACACCACGAAAGATAGCCATCGTA GTTGGAGAGCCCAAGGCCTTATAAATCCCACACTATGGATTCAGGTGCGGTACCTTGCAGTTGGATTGTGAGTCGTGACACTTAGCTCATCCTTTAATTA GTATCTTTCATGCTTGGAAATCTTGATCAGGACATATTTACTTAAAGTTTGATGAAAACCCATCATAGTTTGTGGACAAGAAAAGTTTTACTTGCATTCT AAGAAAACAAAATACTAAATACAACACAAACTTTAACATTATTATAAAAAAAAACTACACTATATCATGTTTCACTCATGATCTTATGATAACTCTTCAC TTTTTTCCCCTTTTCATATTGAAGATGATGGTCACATATTTACTTGGGGATGGAACAAATACGGCCAGCTTGGTCTGGGAGATTCTATTGACAGAAACAT CCCTTGTGAAGTTCCTATTGCTGGTTGTCGACCAAGAAATGTTGCCTGTGGTTGGTGGCATACACTGCTGATAGTGGACAAATCTGTTTGACAAAATTTG TTATTAGCATCAAGGTGGGTTGCACAGTTTTGATAGGTTACTGACTAGTCCTCATTTCATCAGTGGAATGCAGATATGTCCAAAATCACCAAACATGTTT CCTGGTTTGTTTTCTTCCCTTTCCATTTCTAGATTGTAGCTTAGCTGACATGTATTTATGGCTTTCTTACAGACAATAAGGGTTGCAATAGTGTTTATTA TATGGTTGTAATTTACAGCACTTGTTGCGCCCTTAAATTGAACCTTTGCGTGCAATGATGTGACAAAATATTCTAAGTTTTAAATGTGTCACTATACTGA TGTTCTAAACTCTTGAGAGTCTTAATTTGAGTCTTGGTGAGTGGAATACTAAAATGGTGTCAAAGAAACAAAAAAGTTTATAAGTTGGTACATTTGACCT TTTTTTATGATGTAACTGACATACCTAATGGAAATAAGACTTTGTTTTTGTTTAAAAA BLAST |
Tissue | flowers |
Gene name | LI_gene_47961; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_68844
Blastp | RCC1 and BTB domain-containing protein 2 from Mus with 30.77% of identity |
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Blastx | Ultraviolet-B receptor UVR8 from Arabidopsis with 39% of identity |
Eggnog | regulator of chromosome condensation(COG5184) |
Kegg | Link to kegg annotations (105670) |
CantataDB | Link to cantataDB annotations (CNT0000795) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019460943.1) |
Pfam | Regulator of chromosome condensation (RCC1) repeat (PF13540.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |