| Id Trinity | FTRINITY_DN55134_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_20582 |
| Sequence | TTAGCTCTATCGCTTTTGATTTGAATTTCAGTTCAGTCGCTCTCTTCAGCGATAGCACAGATTCAAAATCGCCGATAATGGAGGAGGACATGGACGAGAT CGATTCCGTTCCTCAGGTTTACATGGCTTGCATCCTACATGGTCATAGGATAGGAGTGTCTTATTATGATTCCAGCCTTCGCCAACTTTATGTGCTTGAA GTTTGGGATGATGGTGACAAAGGTTTTCCAGTTGTTGATCTAGTGAAATATCAAGCAAACCCTTTGGTCATCTACACAAACACTAAATGTGAAGAGTCGT TCTTGTCTGCTCTGCAACGAAGTGATGAAGTATCTGAGGCTCCTACGGTGAAGTTTGTAAAAAGTTCAGTATTCAGCTATGAGCAAGCATGGCATAGTTG AGTTCCATGATGGACATGGGAAGTGAAGTACAAGTTCGTGTTAGTGGTGGACTTCTTGCTATATTGGAGAATGAAAGGATTGTAGATACCCTTGAGCAAA CAGAATTTGGAAATACATCAATTACAATAGATTCGTTAGCAGAAATTTCACTAAATAAGTTTCTCAAACTTGATGCAGCAGCTCATGAAGCATTACAAAT ATTCCAAATAGACAAGCACCCAAGCCACATGGGCATTGGTAGAGCAAAAGAAGGGTTTTCTGTATTTGGAATGATAAATAAGGTTTGTAGTAGTTTAAGT TCAATTTAGCATGTACCAGTTTCTTACCGCACATGCCTAATGGTCTGTCTTGTATACAGTGTGTGACTCCAATGGGTAGACGTCTCTTGAGAAACTGGTT CTTGATGCCTATACTTGACCTTGATGTTCTAAACTACCGTTTAAATTCTATATCTTTCTTTGTATGCTCAGAAGAACTAGTTTCCTCTTTGCGTGAAACC CTGAAATCTGTAAAGGACATCCCCCACTTGTTGAAGAAATTTGACTCTCCGAGCTCCTTATGCACCAGCTCTGACTGGACATCTCTTCTGAAGAGTATCT GTGCATTGTTGCATATAAACAAGATATTTGAAGTTGGAATTTCTGAGGGTCTTCGAGAAGAACTGATGCACTTGAACTTGGATATTGTTGAGAAGGCAAG TTCATGCATAACAACAGAGCTTGCTTATATATATGAGCTGATAATAGGTATTATTGATGTAAATAGAACTAAAGAGAAAGGATATATGACAGTGGTGAAA GATGGTTTCTGTGATGAGCTGGATGAGCTGAGGCAAATATATGAGGAGCTGCCAGAATTCTTAGAAGAGGTGGCTTCGGTGCAAATTTTGATCGAATAAA ACCAGTATAATTCTTGCTTTTGTCACAGTATAATTTTTGCAGGTTTCATCATTGGAACTTGCACAACTTCCTTTTCTATGCAAGAACAAGCTTATTCCTT GTATAGTTTATATACAGCAAATAGGATATTTAATGTGTATCTTTGAAGAAAAACTTGAAGAAACCACTCTGGAGAATCTTGTAGACTGGGAATACACTTT TTGGGATGCAGATGGAGAAACAAAAAGATACTTTTATCGTACTCCTAAAACACGAGAGTTGGACAATCTTCTAGGAGATATTTATCATAAAATTCTAGAT ATGGAGAGGGCGATCACCAGAGACTTGTTTTCACATATACTATTGTTCTCAACCCATTTGATAAAGGTGGCTACTTTTGCAGCTGAACTGGACTGCTTTT TGTCAATGGCATTGGTTGCTCATCAAAACAATTATGCCAGGCCTTGGTTAACTGAAGAAAATGTGCTTGATATAAAAAATGGGAGGCATGTTTTGCAGGA AATGACTGTGAACACTTTTATTCCCAATGACACTAAGATTCTTCAAGATGGAAGAATTAATGTGATCACTGGTCCTAATTTTTCTGGCAAGAGTATCTAC TTAAAGCAGGTGGCTTTAATTGTTTTCCTATCTCACATTGGTAGTTTTGTGCCAGCTGATGCAGCAACTGTGGGTCTGACCGATAGAATATTCTGTGCAA TGGGAAGCAGGCTTATGACAGCAGAACAATCAACATTTATGATTGATCTACATCAAATAGGGATGATGCTCAGGCATGCAACTTCCCGATCTTTGTGTCT GGTGGATGAATTTGGCAAAGGCACTCTTACAGAAGATGGTGTTGGTCTGCTTGCTGGAACAATAAATCATTTTGTCACGTGTGATGAACCCCCAAAGGTT TTTGTGAGCACTCATCTCATGGATTTAATGCAAGGGCATTCCTTAACCAAGGTTATGCTTGTGCTTCAATGTGAAGTTGAAGTTTTAAAACTCAATTGAT TCATCATGAACATAATTTCGTTGGACAATTTCAGTCTGAGCAAATTAAGTTTCACACGATGAGCATACTGAGGCCTGATGACAATTTGGCACATATAGAA GACATTGTATTTTTATACAGGCTTATTCCTGGGCATGCACATCATAGCTATGGGCTGCACTGTGCACTGCTTGCAGGTGTGCCAGACAGAATTATAGAAA GAGCAGCATTTGTGCTGGACGCAGTTGCGAATAACCGGTATGTTGAGCGATTAAGCAATGATAACATCTCAGCTCAGGATCAACAATACAAGGATGCCAC TGAGAAGTTGTTGAAATTCGACATTGACAAAGGCGACCTAAAACTATTTTTTGAGGATATATTTTCTCTAGTTCCTAATTGCTAACTTCAGGCAGCTACT AGCTGTTTCAATGTAATAGGAGATGTGTAAGTTGAAGGACCATTGAAAATTCTGTCAACAAAGATCCGAGAAGCAGCCTCGGTCGGATGGAATTGATCCC AGAAGATGTGATCTTGTCTATTGGGACAAAGGCTAGACACTGGCAGGCAAGGAGCCTTGGCCTTCAGCTCACCAAGTCCACAACAAGCAGCTTTCACCTC TGCAAATCCTGAAAGATATATTAACTCATTATTAGATTCCAATCTGATAAAACCTTAACTTTGATTTACTCTTATCCAGCCTCAAACACTGAAAAAATAA CCTCAGTATGATGATTACACCAACAATTTACAATTTCAAATTTGTGTTATTATTGTGTTTTCAAAAGTATATAAAATCTAGTTATTATGACTTGTTAATG ATAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_48840; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_20582
| Blastp | DNA mismatch repair protein MSH5 from Arabidopsis with 77.44% of identity |
|---|---|
| Blastx | DNA mismatch repair protein MSH5 from Oryza sativa with 68.94% of identity |
| Eggnog | that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249) |
| Kegg | Link to kegg annotations (AT3G20475) |
| CantataDB | Link to cantataDB annotations (CNT0002051) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019435604.1) |
| Pfam | MutS domain V (PF00488.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |