Ll_transcript_20338

• Id Trinity: FTRINITY_DN55142_c1_g1_i7
• Name Transcript: Ll_transcript_20338
• Sequence: ATCCAAACAGCAGCGACTTGCGTTTATGTTAACAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACAAAACTGCGAACTCTGGTTCTGTGCGAACTC TAGGGATTTCATTCATTCCATATTTCAATTCGAAATTCCTATTCCAATCCCTAATTTCATTCTGAATGGATAAGGAAGATGATGAAGCTCCTACTCTACT CTCTCATGACCTTTCAAACACCGAAGAAGAAGGAGAGAACGTGATCGCAGATGAGTTACCTCAACACGGAGAAAACGCTGTGGATGATGTAGGTCTGGGA ATTGTTGACGTGGCATCAGCGAAGACCGAAGCTGTTGCGGTTGTGTCGGAGGAGAGAGAGGTTTCCGATTCGGTTACTGAGGGCCAAGGAATCGAGGATA AAGTTGCTTCAGCTGTTGACGATGCTGTCAATGCCATTCAGAATCCGAGAGTGGACGAGGGAACTGAGGTTGATGACGTGGAGAGTGGAAAGGAAGAAGA AGAAGAAGAAGAAGAAGAGGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGGAGAAGATGATGCTGATGTGGGATATGATGATAAGGCGGATGAAGCGGTC GACGAAACCGGTCGAACTCAGGGAACTGATGATGTAATCAGAGATGAAAAGGAGGCAGTGAATGAAGAAGAAGAGGAAGAAGAAGAAGAGAAGGAGGTGA GTGTTCATGAGGGTGATAACGATGGTCTCGGTGATGATACGACACAAGAGACGGACACTGCTGCTTTGATGGAAGAAGGAGATGGAGAAGAAGCTGGTGC TGGTGATGGTGATGGTGTGGGTCAAGATATAGAGGAAGAAGAAGAACAAGGAGGTGGTGGTGAAGGTGATGGTATGGAAGAAGAAGATGAGGTGAGAGAG GAGCAGAGTGAAAGTGTGAGTGGTGGGAAGAGAAAGCGCGGGCCTGCCAAGAATTCTAAGACAACAAGGAGAGTTGCTTCCAAGAAAAAGATGGAAGAGG ACGTTTGTTTCATTTGCTTTGATGGCGGTGCCATTGTGCCTTGCAACCGCAGGGGATGTCCTAAGGCTTACCATCCTTCTTGTGTTAATCGTGATGAAGC CTTTTTTCGAACCAAGGGAAAATGGAATTGTGGTTGGCATCTTTGCAGTAACTGTGAGAAGAATGCTCACTATATGTGCTATACATGTACGTTCTCTTTG TGCAAGGGATGCATCAAAGACGCTATTATCTTTTGTGTTAGGGGAAACAAGGGCTTTTGCGAAACATGCATGACAACTGTGATGTTGATTGAACAGAATG AGCAGGGAATCACGGGACAAGTGGATTTTGATGATAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTATCTCTAAC ATTTGATGAACTTACTGAAGCTAAAAACCCTTGGAAGGGATCTGATATGGCTGCTTCTAAAGATGAATCACCAGATGAGCTTTATGATGCAAACAATGAT AGAGGATCTGACTCAGATAACTCCTACGAGAATATAGGTTCTAGTCGTTCTAAAAGAAGAAAGGGCAAGAAACGGGCAAAATCTCGTTCCAAAGAAGGGA ATTCATATGCAGCAACAGTGCGTGCTGCTAATGTGACATCTGCAGATGACCGATCTGAATGGTCTTCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAG AAATGGAGACACATCTATTTTATCTCAGTTTGATGTTCAAGCCCTTTTGCTAGAGTACATCAAAAGAAATAAGCTTCGGGACCCTCGCCGAAAAAGTCAA ATCATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCTCATTTCCTTTTAAAAGAGG ACTACCAGGGCGAAGATCTGCAGGGGAGTGTCGTTGATACTGAAGCTACTCATTTAGATGGTGATGGAAACACCGATTCATATCTCAAAGCTGGCAAAGA TAAGAGACGTAAAACTCGTAAAAAGGGTGATGAGAGAGGACTCCATTCTAATGTTGATGATTATGCAGCTATTGATAATCACAATATCAATTTAATTTAT CTAAGACGTAATTTGGTTGAAGATCTACTTGAAGATACTGAGAATTTTCATGATAAAGCTGTTGGTGCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTC AGAAGCAAGATTTGTACAGGCTGGTTCAGGTTGCAGGTACGAGCAAAGCAGCAGAGCCATATAAAGTGGGTAAAAGGATGACAGATATCTTGCTAGAGAT TTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAACCAGGAGTTCACAGAGGATGAATGCAAACGTCTTCGCCAAAGCATAAAGTGT GGACTTATAAATCGACTGACTGTGGGCAATATTCAGGACAAGGCATTTGCACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAGACAGAGATAGTGCGGC TAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGACGGAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAGCGTCA ACGAAGATTGGAGGAAGTTCCAGAAATACATGTGGATCCCAAAATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGAATGATAAAGGACAA GAAAGCTATATGAGGCCTAGAGGATCTGCTGCATTTGGAAGGAAGGCCAGGGAAATTGTTTCTCCTAGAAGTGGTTCAAGTGATTCTTGGAGTGGAACAA GGAATTATTCTAGTGCTAATAGGGAACTCAGCAGAAATTTGTCTAATAAGGGGTTTTCAATTAAAGGTGATGATGTTTTTAATTCTAGCGAGGCATTAAA TGATGCTCAATTGCGAGATCGGGAATCGCAACTATCTAATAGCAGGGAGAGGCAAAGACTATCTTCAAGCTCTGAAATTGGTGCGAAAAATGCCCAGCCA CTGGTAGGAACCGAGTCTTTCTCTAATGCTGTGTTAGAACCTTCTGCAGCACCATCTTCTGCTGGAATAGCTTCCCCCACCGTGAAAATTAACGAAAGTG AAAAGATGTGGCACTATCAGGATCCGTCTGGAAAAGTTCAGGGACCATTTTCCATGGTTCAGCTTCGAAAATGGAATAACACTGGTTACTTTCCTGCTGA TTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGAGTCCATGCCCTTAAAAGATGCCTTAGAAGGAAAGTTTTCTAAGGAATCACCAGTGGTGGATAAA ACTCTTCCTAAGGCTCAAATGGTGCATGATTTACATAACTCGTCCTCGTACCTTGGGAAGTCTCATTTGGCTGCACAACAAGGCATAATAGAAGCTCAAG TTGGAGCAAGACCAACATTTGATCAAAACAGTGGATCTTGGAATTCTTCACATAGTTCTCTGGGTTCTCTTGGCCAAACTGCAGGAGGAAGTAGACCTTC TCCATTGGTAGTCGAGGTCCCCAAGACTACTTCAGATGGATGGGGTTCTAATGTTGGTGTTCGCAATGAATCAACAAATCTTCCTTCACCCACTCCTCAA ACTCCTTCAGTTGGGACTATGGTGCAGGGTTTTGAAAATAATTGGTCACCAACACCCATCCTAGGAAACCCAAACCTGAGCGGCCCTGGTGCTTTGCAGA TGCAAAATGCTGAAAATGGTTTGAGTTCACGAACTGTGGTTATGTCAGCTTCTACTACTCAAGTACATCCTCAAGCAACCGTGCTGACACCTGGTCTGCA AAACCAGGTTGTTAGTAGCCATAACTCTCATGCTGGAGCTCAAGGGTGGGGTTCTGGTTTGGTTTCAAAGGTAGAACCACAGGCCTTGGGAGCTACTCCA TCTCAAAGGGTAGAACCTAATAATCATGCTACCATGCCTGTCCAGAACTCTGCCTCATTTATCAATGGAAATCCAACTGGGAGTTTCCCTGCACAAAGCT ATCCGGGCCAATCAAACATTTCAGCTCCAGCTCCACCTAATAATATGCCGTGGAACATGGGTGTTGTACAAAATCAAAATGCTACTGCCTGGGGTGGCAT GCCAGGAAATCAGAATACCGGTTGGGGTGGGGGGGCTGTTCCTGCCAATGTGAATATGAACTGGATGCCTGCGCAGGTGCCAGCACCTGGAAATGCTAAT CCAGGATGGGCTGCTGCTCCTAGTCAAGGGCAACCACCTCCTGTAAATGCAGCTGGTTGGGTTGCACCTGGTCAAGGACGGCCACATGTAAATTCCAACA TGGGTTGGAGTCAAGGGCACACACCGGGAAATGCCAATCCTGGCTGGCCTGCATCGGTCGGGAATCAAGGTACATGGGGAGGAGGTGAGCATCATCATAA TGGAGAGAGGCTCACCAACCAGCGTGATCGTGGTACCCATGGTGGCAGAGATTCTGGTTATGGAGGTAAACCTTGGAGCAGGCAGACATCATTTAACAGC GGAGGAAGCAGAGGAGGAGGTTCATCCAGGCCTCCTTTCGGGGGACAGAGAGTTGCATGCAAGTTCAATGAAAGTGGACGTTGCAAGAAAGGGGACTCAT GTGATTTTATGCACAATTAAGAATCGTAGGGGATTAGCGTTAGAGAAGAAGAATATGTGTACACTAGTAATTTTCACATTAACATTGTACTATCTCAGCA TGCTTCATGTATTTAGAACACCTGCGTGGTTGCATCTCATTTATTTTTCTGGCCATGTACTATTATTATCCACTTACTTTGAGTTGACTTAGTTACACAA GTCGAGGTGGCTTTCTTAGAATAATAATGACTCAACATCGTCCAAGTTAATAGTGTTTTTTGCTTTCTTGTTTTAACAAAAAAATGAATGTCTCGGGTCA AAACATGTCAGACAGCCTATCAGATGCCTATTATCTGACTTATAACAAGTTAGGTCAGGTCAAGCTTAGTACAACCTGTTATATCTTACTTTCTCTATGC TTTTTTAAATCTATGCGTTTTCAAGTTTCTAATTAGTCTTCTAACTGATTTGTATTAATTAAAACTTG
• Tissue: flowers
• Gene name: LI_gene_48906;
• Additional information: details;

Expression of Ll_transcript_20338

FPKM

• FPAB: 13.6
• FPNAB: 14.1
• LF1: 15.1
• LF2: 3.7
• LF3: 15.7
• LF4: 12.2
• UF1: 5.2
• UF2: 15.5
• UF3: 13.7
• UF4: 5.7

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_20338

• Blastp: Zinc finger CCCH domain-containing protein 19 from Arabidopsis with 46.93% of identity
• Blastx: Zinc finger CCCH domain-containing protein 19 from Arabidopsis with 46.39% of identity
• Eggnog: DNA binding nucleic acid binding protein binding zinc ion binding(ENOG4111KSI)
• Kegg: Link to kegg annotations (AT2G16485)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438191.1)
• Pfam: SWIB/MDM2 domain (PF02201.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;