Ll_transcript_20087

• Id Trinity: FTRINITY_DN55180_c1_g1_i3
• Name Transcript: Ll_transcript_20087
• Sequence: GGCTAAAACCCTAGTTAGCCGTTTCTGATTTTCTTCTCCTTAATACTGAGAATTCAACACAAACCCCAAATTACTCTCACTTATACTCTGCACTTTCCTT CAATGGCTCCATTGACGAGGAAGAATCCTTCGAAGCCACAAAAACCTGCAGCGAAGAAGAACCCTAAAAATAGTAAAGTCAAAACTCCCAAAGATGATTC TACTTCCGAGTCCGAACAAGAAGAGATTTTGCAACAACAACAACTCGAAAACGACGTCGTGGATGATGATTCTGGTTCTGATTCGGATTTCTCTTCCGAT GGGGACGATCCCTTAGTCGACGATTTCCTTCAAGGAAGTGATGATGAAGAAGAGAAAGCTTCGGGTTTGGATTCTGGGTCGGTTTCAGATGGGGATTCTG ATTCAGATGATGAGGATATCGAAACGAAGTCGAGAGCTATCGACGAAGAAAGGGAGAGAGAAAAGGAGGATGCAGATGCTGAAATGCAGCTCAACATCAA AGAAGAGTCTGATGAGTTTAGATTACCAACCTCTGAGGAACTTGAAGAAGAAGCTCTACGTCCACCTGATATCTCTAATCTTAAGAGGAGGATTGAAGAG ATTGTTCGCATTCTTTCGAATTTTAAGACGTTGAGGCAAGAAGGGTCAGCTAGGAAGGATTACATTGAACAACTGAAGAAAGATATATCTTCGTATTATG GTTACAATGAGTTTCTAATTGGTGCTTTGGTGGAGATGTTTCCAGTTGTTGAACTGATACAACTGATTGAAGCTTTTGAAAAGCCTCGCCCTATGTGTCT GAGAACTAACACGTTGAAGACTCGTAGACGGGATTTGGCCGATGTTTTGATAAACAGAGGAGTAAATCTAGACCCTTTAAGCAAATGGTCAAAGGTTGGA CTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTACATGCTTCAAAGTGCAAGTTCATTTCTGCCTGTGATGG CCTTGGCTCCCCAAGAGAAGGAACGAGTTGTTGATATGGCGGCTGCACCTGGTGGTAAAACAACATATATTGCTGCCCTCATGAAGAATACTGGGATAAT TTTTGCAAATGAAATCAAGGCAACAAGGCTTAAGTCACTGACTGCAAATTTGCATCGCTTGGGTGTATCAAACACCGTGGTCTGTAACTACGACGGAAAA GAGCTTCCGAAGGTTTTAGGTCAAAATGCTGTTGATAGAGTATTGTTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCAAAAGACGAGTCTGTTAAAA CCTCGAAAGATTTGGAAGATATACAGAAATGTGCACAACTCCAGAAGGAACTTATTCTTGCTGCAATTGACATGGTTGATGCCAATTCAAAATCTGGCGG GTACATTGTTTATTCCACATGCTCAATCATGGTCGCTGAGAATGAAGCAGTTATTGACTATGCACTCAAAAAGAGGGATGTAAAATTGGTTCCATGTGGA CTTGATTTTGGGCGTCCAGGGTTTACAAAGTTTAGGGAACTACGCTTTCACCCTTCTTTAGAAAAGACAAGGCGTTTCTATCCCCACGTACACAATATGG ATGGCTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCTCAAAGCCAAATTCAAAATTATCAGAACCATCCGAGAATGAGGAAGAAGAGACTGAGCTTGT GGAGGAAGAAGAGACTGGGCTTGTGGAGGAAGAGGAGAAGCCAAGTAACGACCTAAAAGAAAATGACATCGAAACTTCCGAATCTAAATCCAAAAAGGAG AAGCCAAGTAACGACCTAAAAGAAAATGACATCGAAACTTCCGAATCTAAATCCAAAAAGGAGAAGC
• Tissue: flowers
• Gene name: LI_gene_49230;
• Additional information: details;

Expression of Ll_transcript_20087

FPKM

• FPAB: 0.2
• FPNAB: 0.4
• LF1: 0.2
• LF2: 0
• LF3: 1.3
• LF4: 0.2
• UF1: 0.3
• UF2: 0.5
• UF3: 0.6
• UF4: 0.4

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_20087

• Blastp: Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase from Homo with 64.99% of identity
• Blastx: Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase from Homo with 65.22% of identity
• Eggnog: nOP2 Sun(COG0144)
• Kegg: Link to kegg annotations (4839)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019447055.1)
• Pfam: N-terminal domain of 16S rRNA methyltransferase RsmF (PF17125.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;