Id Trinity | FTRINITY_DN55180_c1_g1_i4 |
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Name Transcript | Ll_transcript_20088 |
Sequence | TACCTGAAAATATTTAACAAGGACTACAATGCTGTGTACTTTTTGATGAAGTGCTGTTTTTCGTTATCATTGATTTGCTCATTTCTTTGTTTAAATGTAT ATTTTTGCTTCCATTTGCCCATATGATAGCTAGTTGCATGATTTTAATATTATTAAAAAAGCACGCATTAGAAGAAATAAGGATTGAATATCTCTTGATT GTAAGCTTTGCTATCTCGACTTTGTTTGAACTAGTTTGTGTTTTTTTGGGGGGGATGAGAAACTGAGTTATAATTTTAAACACTAGAAAAACATGGAAGT CTCCTTTCAAGTTATGACACTAGAAAAACATGACCAAGTGTGAATTATTTGAACTGATATTTGTTTCATTTTTCTTGGGTTTGGTGTACTAGTTTGTTGG ATTTTTAATTTTAGACTTTGTCCTTGAACCAGTTGTCTAGGCCTTCGGCACATCTTGATATTCTGTTGTTTATTGTTTGTAAATTCATGTTTCTGGTCAA TATTTTTATGGCAGGGATAATTTTTGCAAATGAAATCAAGGCAACAAGGCTTAAGTCACTGACTGCAAATTTGCATCGCTTGGGTGTATCAAACACCGTG GTCTGTAACTACGACGGAAAAGAGCTTCCGAAGGTTTTAGGTCAAAATGCTGTTGATAGAGTATTGTTGGATGCCCCTTGCAGTGGAACTGGGGTTATAT CAAAAGACGAGTCTGTTAAAACCTCGAAAGATTTGGAAGATATACAGAAATGTGCACAACTCCAGAAGGAACTTATTCTTGCTGCAATTGACATGGTTGA TGCCAATTCAAAATCTGGCGGGTACATTGTTTATTCCACATGCTCAATCATGGTCGCTGAGAATGAAGCAGTTATTGACTATGCACTCAAAAAGAGGGAT GTAAAATTGGTTCCATGTGGACTTGATTTTGGGCGTCCAGGGTAATTATTCCATTCCTGTGTACCTCACAAGTGGCAACTTTAGTTTTGATTATTAGTAA TTGCTTATGTTGTGACATTTTCATTGGCAGGTTTACAAAGTTTAGGGAACTA BLAST |
Tissue | flowers |
Gene name | LI_gene_49230; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_20088
Blastp | Probable 28S rRNA (cytosine-C(5))-methyltransferase from Mus with 67.83% of identity |
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Blastx | Probable 28S rRNA (cytosine-C(5))-methyltransferase from Mus with 59.65% of identity |
Eggnog | nOP2 Sun(COG0144) |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019447055.1) |
Pfam | 16S rRNA methyltransferase RsmB/F (PF01189.16) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |