Ll_transcript_20091

• Id Trinity: FTRINITY_DN55180_c1_g1_i5
• Name Transcript: Ll_transcript_20091
• Sequence: GTGTGTTATAATTTTCGCGTTGAAGTGTTTTTTCATGATTATGATGTTTTTATACTTTGCAGAGAAAGCTTCGGGTTTGGATTCGGGTTCGGGCTCAGAT TCTGATTCGGATGAAGAGGATATTGAAACGAAGTCGAGAGCTATTGATGAAGAAAGGGAGAGAGAAAAAGAAGACGCAGATGCTGAAATGCAGCTCAATA TCAAAGAAGAATCTGATGAATTTAGATTACCAACTGCGGAGGAACTTGAGGAAGAAGCTCTACGGCCACCTGATATTACTAATCTCAAGAAGAGAATTGA AGAGATTGTTCGTGTTCTTTCGAATTTTAAGACCTTGAGACAAGACGGGTCATCAAGGAAGGATTACATTGAACAGCTTAAGAAAGATATACGTTCCTAC TATGGCTACAATGAGTTTCTAATTGGTGCTTTAGAGGAGATGTTTCCAGTTGTTGAACTGTTACAGCTGATTGAAGCATTTGAAAAGCCTCGGCCAATGT GTCTGAGGACTAACACTTTAAAGACTCGCAGAAGGGATTTGGCAGATGTCTTGATAAATAGAGGAGTAAATCTAGATCCTTTAAGCAAATGGTCAAAAGT TGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTACATGCTTCAAGGTGCGAGTTCTTTTCTACCTGTG ATGGCATTGGCTCCACAAGAGAAGGAACGAGTTGTTGATATGGCGGCTGCACCTGGTGGCAAAACAACGTATATTGCTGCCCTTATGAAGAATACTGGTA TAATTTATGCAAATGAAATTAAGGTGTCACGACTGAAGTCACTAACTGCAAATTTGCATCGTATGGGTGTAACAAATACTGTCGTCTGTAATTATGACGC AAAGGAGCTTCCAAAGGTTTTGGGTCAGAACACTGTTGATAGAATATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCAAAAGACGAGTCTGTT AAAACCTCGAAAGATTTGGAAGATATACAGAAATGTGCCCGTCTACAGAAGGAACTGATTCTTGCTGCAATTGACATGGTGGATGCCAATTCAAAATCTG GAGGGTACATTGTGTATTCCACCTGTTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGACTATGCACTTAAAAAGAGGGATGTGAAGCTGGTTCCTTG TGGACTTGACTTTGGGCGCCCAGGGTTTACAAAGTTTAGGGAACAACGTTTTCACCCTACCTTAGAGAAGACAAGACGTTTCTATCCTCATGTGCACAAT ATGGATGGTTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCAGCTCAAAGCCAAGTGCAACTTCCGAACCATTAGAAAAGGAGGAAGAAGGTATTGAGC TTGTGAAGGAAGAAAAGGCAAGTAATGGCCGAAAAGAAAACGGCAAAGACTCTCCTGAATCAAAATCCAAAAAGGAGAAGAAAAAGAACTTTGCACCTAA ACAAAGTAATGACATCAAAGAAAATGGCGAAGAATCTTCTGAATCAAAATCCAAGAAGGATAAGAAAAGGAAATTTCCACCCAAACCAAGTAATGACATC AAAGAAAATG
• Tissue: flowers
• Gene name: LI_gene_49230;
• Additional information: details;

Expression of Ll_transcript_20091

FPKM

• FPAB: 2.2
• FPNAB: 2
• LF1: 0.7
• LF2: 1.9
• LF3: 0
• LF4: 3.8
• UF1: 0.5
• UF2: 0.8
• UF3: 3.2
• UF4: 3.7

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_20091

• Blastp: Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase from Homo with 64.32% of identity
• Blastx: Probable 28S rRNA (cytosine-C(5))-methyltransferase from Mus with 64.55% of identity
• Eggnog: nOP2 Sun(COG0144)
• Kegg: Link to kegg annotations (4839)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019426277.1)
• Pfam: N-terminal domain of 16S rRNA methyltransferase RsmF (PF17125.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;