Ll_transcript_20094

• Id Trinity: FTRINITY_DN55180_c1_g1_i6
• Name Transcript: Ll_transcript_20094
• Sequence: TTCATTGCTAGCCATACCAAATCCCAACCGAGAAAGTCAATTTAACATTTTTCTACATTCTATGCAAAAACGACGTCGTCAACGTGTTCGTTTCCCCGTA AACCCTAAAACCCTAGAGCTAGCCGTTTCTGATTTCTTCTTCTCGTTACTTAGAAGAACAAACCCAAATCACAATTCGCATACACTGTTGTTACTTTCCT TCAATGGCTCCTACATTGAAGAAGAAACTTTCCAAGGCACAAAAATCCACAACGAAGAAGAATCTCAAAAACAGTAAAATCATAACTCCCAAACATGATT CTACCTCTGAATCTGAACAAGAAGACGTGCTTCAAAAAAACGAACACGAAGTCGTAGATGATGATTCGGAGTTTTCTTCTGATGGGGATGATCCTTTAGT CGACGATTTCCTCCAAGGAAGCGATGATGAAGAAGAGAAAGCTTCGGGTTTGGATTCGGGTTCGGGCTCAGATTCTGATTCGGATGAAGAGGATATTGAA ACGAAGTCGAGAGCTATTGATGAAGAAAGGGAGAGAGAAAAAGAAGACGCAGATGCTGAAATGCAGCTCAATATCAAAGAAGAATCTGATGAATTTAGAT TACCAACTGCGGAGGAACTTGAGGAAGAAGCTCTACGGCCACCTGATATTACTAATCTCAAGAAGAGAATTGAAGAGATTGTTCGTGTTCTTTCGAATTT TAAGACCTTGAGACAAGACGGGTCATCAAGGAAGGATTACATTGAACAGCTTAAGAAAGATATACGTTCCTACTATGGCTACAATGAGTTTCTAATTGGT GCTTTAGAGGAGGTTGAAAACTAGCCCTATTTCTCTGGTGTCTTTTTTTTGAACTCTAATTTCTGTCCTTTTTTCTCTTCCATTGTTACTTATACTCAAA GTTGCTGGAAGTAGAAACTTAGTAGTGCCTCATTCACACGATTATGTGTTTTGTTTTAGATGTTTCCAGTTGTTGAACTGTTACAGCTGATTGAAGCATT TGAAAAGCCTCGGCCAATGTGTCTGAGGACTAACACTTTAAAGACTCGCAGAAGGGATTTGGCAGATGTCTTGATAAATAGAGGAGTAAATCTAGATCCT TTAAGCAAATGGTCAAAAGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTACATGCTTCAAGGTG CGAGTTCTTTTCTACCTGTGATGGCATTGGCTCCACAAGAGAAGGAACGAGTTGTTGATATGGCGGCTGCACCTGGTGGCAAAACAACGTATATTGCTGC CCTTATGAAGAATACTGGTATAATTTATGCAAATGAAATTAAGGTGTCACGACTGAAGTCACTAACTGCAAATTTGCATCGTATGGGTGTAACAAATACT GTCGTCTGTAATTATGACGCAAAGGAGCTTCCAAAGGTTTTGGGTCAGAACACTGTTGATAGAATATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTA TATCAAAAGACGAGTCTGTTAAAACCTCGAAAGATTTGGAAGATATACAGAAATGTGCCCGTCTACAGAAGGAACTGATTCTTGCTGCAATTGACATGGT GGATGCCAATTCAAAATCTGGAGGGTACATTGTGTATTCCACCTGTTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGACTATGCACTTAAAAAGAGG GATGTGAAGCTGGTTCCTTGTGGACTTGACTTTGGGCGCCCAGGGTTTACAAAGTTTAGGGAACAACGTTTTCACCCTACCTTAGAGAAGACAAGACGTT TCTATCCTCATGTGCACAATATGGATGGTTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAGCAGCTCAAAGCCAAGTGCAACTTCCGAACCATTAGAAAA GGAGGAAGAAGGTATTGAGCTTGTGAAGGAAGAAAAGGCAAGTAATGGCCGAAAAGAAAACGGCAAAGACTCTCCTGAATCAAAATCCAAAAAGGAGAAG AAAAAGAACTTTGCACCTAAACAAAGTAATGACATCAAAGAAAATGGCGAAGAATCTTCTGAATCAAAATCCAAGAAGGATAAGAAAAGGAAATTTCCAC CCAAACCAAGTAATGACATCAAAGAAAATG
• Tissue: flowers
• Gene name: LI_gene_49230;
• Additional information: details;

Expression of Ll_transcript_20094

FPKM

• FPAB: 0.4
• FPNAB: 0.4
• LF1: 0.2
• LF2: 0.3
• LF3: 0.5
• LF4: 0.3
• UF1: 0.1
• UF2: 0.6
• UF3: 0.4
• UF4: 0.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_20094

• Blastp: Probable 28S rRNA (cytosine-C(5))-methyltransferase from Mus with 62.84% of identity
• Blastx: Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase from Homo with 57.61% of identity
• Eggnog: nOP2 Sun(COG0144)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019426277.1)
• Pfam: N-terminal domain of 16S rRNA methyltransferase RsmF (PF17125.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;