| Id Trinity | FTRINITY_DN55199_c1_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_20391 |
| Sequence | GTCATTTCACATTTCACTTCTTTTTTTTTCATTTATTTTAATTCAAATTTCTTCTTTCTCTTTTCAATTCAATTCTCTTCATTTTCAATTCTTTCTCTCT TCTCTTTCGGTATGCAACGTTTCTCTCAAAACGACTTCGTTTCATTCCATCATTCTCACATTACAATCCAAACCCTAGCTCTATATTCCATTCCATTGCT TCATTATAACTAAATTAAAGCAATTTTTCCTTCAATTGAAAGCAGAATCATAATTGGGTTTCATTTTTTTGTATTGGTTTAATTTGAGTATCTAAAAGTA TGTTTTTTTGGGTTTCATAATTTTGGGATTTTTTTTCCCATCTTATAATCCATATAATGTGTTATAGATCCTTTGTTTCTGAATAGTATAACTGTTTTTA TTCTCATCTGTTTGATATTACTATATTTGAAGAATGGAATGTTTTTTTATGAGTGTGATTATTTTGGGGATTTATTTTGCTATCTTATCATTCACACCAC AAATCAGACTATGTGTGCTTGATGCTATACATAACTCGGATAAAGTGTGAAGGTTGTGTTAGACAATCAACATCGACATAAAATTTGCCGAATCTATATG ATATGGATCACTCATACCATGTGTTATATATGTTTTGTTTCTGTATAATATAATTGCTATTGTTCTCATTGGTTGTGAATTACAAATTTTAGTTGTTGTA TATTGAATTGGTTTATTTGCTTCCTTATTTAGATTCTAAGGTCAATAATCTATGGATATCGATAAAATTTTGGGTACTACCAAACCTGCAAGTTTTCCAA GGAAGAGTGCTATTTATGTGTGGGGATACAATCAATCTGGTCAGACAGGGAGAAAGGGGAAACAGGATCAGCTGAGGATTCCGAAGCAGCTGCCTCCTGA GCTGTTTGGATGTCCAGCTGGTTTTAATGCACGGTGGTTGGATGTTGCTTGTGGTCGTGAGCATACCGCAGCAATTGCTTCCGATGGCTCACTTTTTACA TGGGGGGCTAATGACTATGGTCAATTGGGTGATGGAACTGAGGAGCGAAGGAAACATCCGAAGAAAGTAAAACAACTAGGGTCGGAGTTTGTAAAATCTG TGTCCTGTGGAGCACATTGTTCTGCTTGCATTGCAGAACCTCGTGACAATGATGGTACTGTATCTACTGGGAGGCTCTGGGTTTGGGGACAAAATCAGGG ATCAAATTTTCCTAGATTGTTCTGGGGGGCCTTCGAACCTAACACGGTTATTCATCAAGTGTCATGTGGAGCTGCCCATGTGGTTGCTTTGTCTGAGGCG GGCCTTCTACAAGCTTGGGGCGAGTCACTAATTGCTTCTCTTTATTTTCTTTCCAATGTTTTGTAACATCAATGATTCATGATTGCCTTTTACGGAGTTG ACATGGTTAAAGACCTTTAAATTTACAGAGCATTGAATGCAGTGAAGTAAACTTGAGCATTCACAAAGTAGGTTTCTTGCCACCTACTAATCGGACTTTT CTCACTGTTTCCATAAACCAGGATACAATGAGTGTGGCCAACTTGGCCGAGGTGTTACTTGTGAAGGACTTCAGGGGGCTCGTATTTTAAGTTCTTATGC TAAGTTCCTTGATGAAGCCCCCGAGCTTGTGAAGATTACCAAAGTGTCATGTGGGGAATACCACACAGCAGCCATTTCTGATAAGGGCGAGGTGTAAGTA ATTTGAAGGACATTCTAGTTGGAGATAATCAGATAATTATAATTTTAAGCTTGAGAATTGTGGTTTTCCGCATGACATTAGGGAATCTGACACCAGGAGA CAATATGCAATGGAAATCCTGCATCTATTATGCAAGTTTCTATTCCCTTGGCTTGGTTATACAATAAAAAAACTATAGTTGACTGTAGTTATATATTCCT AGAGCCAACAGGGTTATCTTCTAAGTTAAGTAACCGTAATATTATCTAGATTTTGTTTGAAAAAGTTTGCAACAAGATTTTTTATTCTGTTGATAATTTG ACATCCACATATGATTTATTGGTAAGTATTTATTTATTATTTTTCATTATAGAATGTTTGTTATGGTGTAAGATAGTAGTTGCTGAAAACTGGGAGCTTA AAATATGTATGGTAACATTGCATCAGAAATAGGCATATGTTGTTTACGGTGGTTTCCACTCACCAAATTTGCTATTTTGTGTTTGTGATTTTTAATGAAA AAAGAATATGCACATATTATAGAGTGGATGACATCTTTTATTCTTATTGTTGAGACATGTAGACCTCAAGTTACTTCTTTTCGTTTACCGAGGAATTATT TATTCCAGTTATATGTTAGGGATCCATAAGAATTAATAAATCATGACTACTTATGGTATTTAGCTTGTTGTGATAATATTTCCTCACTTATTATATTTTC CGTTGGACCAGTTACACATGGGGGCTCGGAAATATGGGTCAACTTGGCCATTCTTCACTCCAGTATGGGGATAAGGAGCTTCTCCCGAGGAGGGTGGTTT CCCTTGATGGTATTGTCATAAAAGATGTGGCATGTGGTGGTGTACATACTTGTGCTCTGAGTAAAGAAGGAGCACTTTATGCTTGTGGCGGTGGTCAATC TGGTCAGTTAGGCCTTGGCCCCCAAACTGGATTGTTCTCTTGTGTAGCTAATGATTCTCAGACATTTTTCCGAAACATTCCCATTTTAATTGTTCCAAAA GATGTGCAATTTGTTGCATGTGGACATTCCCATACTCTTATTTCTACGAAGGAAGGTCGAATTCATGGGTGGGGTTATAATAATTACGGCCAAGCAGCCA ATGAGAAATGTACATATGCCTGGTATCCATCACCTGTTGACTGGTGCGTTGGGGAGATCCGAAAACTAGCTGCTGGTGGGGGCCATTCGGCTGTGTTGAC CGATGCTTGTTCATTAAAGGAGCTGTGTGAGTTTGTTCTCGCAGATTGTATGACCTTATCAAATGCTGCTAAGGTCGAGGATATTGCTTCTAGAACTGGA TCGGATGCTTTAGCACGCCTTTGCGGAAGACTCAGAGAGTATTTGCTTATTAATGGTGGTGATGATGAAGAGAACGTGGTCAGTAAAATCTGACAATATA TGAAGTTAGTATTAATCACAATTTATTGTTGTAATGTAAATCTGTGTATTCAGAAGTTGTAACTATGTTATTATTCTGTAACTAGTATCAATTGAATAAG GATTTGTACTTGACTATGTATAGACCATGAATATGCCAATATTGAATTTCAAACTTCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_49399; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_20391
| Blastp | Probable E3 ubiquitin-protein ligase HERC4 from Mus with 38.61% of identity |
|---|---|
| Blastx | RCC1 and BTB domain-containing protein 2 from Rattus with 30.17% of identity |
| Eggnog | ubiquitin protein ligase(COG5021) |
| Kegg | Link to kegg annotations (67345) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456541.1) |
| Pfam | Regulator of chromosome condensation (RCC1) repeat (PF00415.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |