| Id Trinity | FTRINITY_DN55219_c0_g3_i1 |
|---|---|
| Name Transcript | Ll_transcript_138112 |
| Sequence | CCGTGTGCCAATTGATGACTTCTGTAGTGATTTGGTTAATGGACTTGTATGAAACATGAGCATACAAATTTGTGGGATGTCATTACATTTTGATGGCCAG GAAGTGTGATGGATGCATTTACATTCTGTAGTGTTGTTTTATGCTACTATTTTTCTGAAGATTAATTATTTTTTGATACTCAGATAACTTGATTTAACTG TTGAAATATGTCAGTTATTCCGATTTCGCTGAGCCATCTATCAGTACAGCTGTGAAAGTTAAAAGAAAAGCTCAGTTGTAATTAAAATAACACACTCTCT CATCAAGACACTCTATCCCACCCTTGGTGGGAAGACGCGTGCAACTATGTACAACACAAATTTCAGCTCAACGATATATGCGGTTAGGTGTAAAGAGACA TTTACTTTATCTTCCAATGGCTACACAAATTTCTCGTATGAAAGATTTGATAGAAACCCATCACATTGTTCATCATGTTGTGGTTGTTGTGATTGCTGTT CATTCTCCACTTACAAAGTGCCTGTAAAGTCCAGTCTTCTGAATGGGCTGAAGCAATCTACTCTCCTTCAACTTTCAGCTTCTAGAAGGTTGATTTTGGG TGGTGGAGACCTGTACTTTTCCCGACTACCATCTTTTGATCTCCATAGAGGTTGTTCTGAGCTTAACTATTCTGTTCACGAGATAACTGTTTGCAATAGA AGTACAAGGAGAACAAAGGGAAGATGTTTGTGTACGGCTCCACGAAAAGGAAGGGAAATATGCCACACAATTGATTCTGATGATGTTGAATCAGTTCTCA GCTTATTGAGTGAAGAAGCAGATAAGGATTCTAGCAGTATCAAATTGAAGAGCGTGTCTTCACCCAAAATAATGGAAGCAGAGAAGAAAAGAAAAAATGT GATCAAAGAGAGAAATTTGAGTTTAAGTAAGAAAGTAGAAGCAAAGAAGAAAGGAAATTTGAAGCTACATGAGACATCCACTATAGACTTGAGAAGCGAG AATGAAAAACCCTGCAAAGAAAGGGAAACCTTCAATAAAAGTGAGAACCATAGGAAGCGAAGAGATGTTTCTAGTTGCTCATCTTATTACTCACTTTCAT CAGGAGATCTTGCAAGTGACCTGGAAGTTCAATATAAGCATGATTTGGAAGAATTATCAGTAGTATATGAGAAAGATTGTGCAAATCACGAGGGACAAGT AAAGGATGAACTGAACAGGCAAAGAAATTACTCACAGAAGCTGCATTATGTTCCAAATCAGGAAAGGACTGCATTTAGTGCTAATAATATTGATTGGAAC CTAAGGAAGAAGTCTGAAAAGAAACCGACTGACATGACTATGCAAGAAACATTATCCACAAAAGAACACAAAGATAAGCATTCAAGAGCATTTCGAACTC ATGAATCTAGTTATGGAAATACATCTATTTCACGCAAGCAAGTCGAATGTGAGGAAGATAATTTATCTTTTGTCAAGGATTTGGATAAGAAAATGGAAAA GGCATATATTAAAGCAAGGGGGAAAAGAAATCACCAATCTACAGATACACAAGAGTCTGGTTATGATGAAGTTGAAACAACTTTGGCTTCAAAGAAGACA TTCAGTGGCAGGGAAGGGAACCATGAGATATCAGAAACATTGTTACGTGAAAGAAGTGATGAACATAAAAAGTTTGTTGGATCTAATTCTACCACAGGAA AGGAAACTTCAGAATCAAAGAGGACATTCAGTGGCAGGGAAGAGAATCCTGAGATATCTGAAACACTTTTACACGAAACATGCGAGGAACGTAAAAAAAT TGTTGGTACTACTTCTACCATTGGAAATAATGTAATAAATAGGAATTCCCAGAAATATATGGGAAAAACAAAAGTTGAGGACACTGATAGAAACTTAAAT ACTCGAATGAAGAATTTGGCAGAGGAAAAAGTTACAATTTTGAGTTCTGTTCAGGGAGTAAAGGAGCAACAACACCAAAAAGGAGAAAAGATCGTTGCAC AGGCTAAAGAGAGCAGAAAGCCTCAGCGATTTTCTGAAGTATCACAAGTTCATGAGAGTAATGTAGACGATACATCCATTGTGACATCCAGAACTAGAAT AAATGACTGGGGAGGGAATTCAAACTCAAGCACAGCTGCCAGGGGTACATGGCACCAAATAGATGATAGGACAAATCAGAGTATTCAACACGGGAAAGGG TTTGAACATGTCAGCACCTTATCAGAAGGGTATGCCAGTGATGAAAAGCAAGTTTCCAGTTCTCAAAGAATTTCTGGGAAGGTGAGGTTCATCCCAAAAA GTAAATCAATGTCAGTTGTTAAAACCAGAGAGAGCTATTGCCAAACTGATGAAAGGATTACAAATTTTGACTTGTACAGTGAGGGCCAAAGACCAATGAT CCTAGCAGTTTCTGATGAAACTGTCTCAAGAGAGGAAGCCAACTTCCATGGATCGTTGAATTTGGTTTCCGAGGCTGGAAAACGTGTTAGATTGGCATCA GGGGACGAACAGAGTTCAGAAGGAATGCTGACCCCTTCCTCATCCAGATTGATGGGTCGAAGCTCAGTACATGTTGAACTCAATGCTGAAATTGAAAATC CTGGGATCATCATTGAAAGTTCAGATAGTGGCTCATCTGCTATGTATGACAGTGCCAGAAGAAATCCCATTTTTCTTTCTGGATCATACTCTACAGATGG AATTCATCAGGCCTATAGTGAACCTTCTAACATCATAGATCTGGAAGGTGGTGCCCTTGGTTCAGCTGATCGTTTAGAGAAATCATCCAAACAGTTTGTT GATGAGTTTGTTGAGAGAGTCCGGCATGAAGTCACCACTTCAGAAACACGAGAGCCAGATGTTACTGGAAAAAGGTTGACCATTGAAGATGAAGGAAATC AGATCTTTAGTTCAAGGCAAGAAGGCACTCAAAATGAGTCACAGTTGAAGGAGCGTGGTTCTAGCCATTCCTCTGGGTTTCCTGGGACCAAAGGACCTTC TGATGAAATGTGGGATGTAAATGAACCATATGTTGAGCAAAGTCTTATAGCTGAAGAACCAGAGATCGGCAAGGAAACTGAGAAAACAATTCTCAGTAGA ACTGGGAGGTCCATGTGGAGTATGATTGCAGATGTTGTTCGATTACGTTGGGGCTCACGTACTGGTTCCTCCACTTCAGTTGGAAGATCAGGTGAGAGAA ACTCGCCAAACAAGTCTGATACTGAGACATGGTTTTCAGGGCAGGAGCATGAGGAAACTAGTAAGAGTAATGTAATAAAGGAAACAAGTGTACTACCACA GACCATGACTTCATCAAAGCCAATTACATCTTATACCCAAAGTGACGGAGACGTGTCTGACACTAAAAGACTGAAGGACAATGGAAAAAATCTTGAAGTT AGATCATCTTCTCCAAATGCATTGGAAAGTGGATCAACATCATTAGGTGCCTCATATGCTTCTGGTGAGGAACATGCTAACTGGAGTGAAGATGGAAAAG ATTTGAAAGTCAGTACTTCAGACATAAAAAATGTGGAATTCCCAATTCCGTTGCCTGCCAGAGGGCCTCCTTTTGTTGGGAAAATTGTAAATGTTGGTGG ATCTGACATATCTGGAAGTGAGCCGATTGTGCCAATCAAAGAACCTGTTGCTGCAGTGCAATTTGAATCGTCTGGCTTAGGGGAAAAGGATGGAGAGTTG AAGCAAAGGAAGTTTCAACGGAACACTCAAGTATTGAGAGATAGGTTTGATGATTGGGAAGAAGCCTACAATGCTGAATTTGAGCAGCGGAGAGTGGATG AAATGTTCATGAAGGAGGCACTTTCGGAAGCTATGAAAGCTGCTGATACATGGGAGGTCCCTGTTGGTGCAGTTCTTGTGCAGAATGGAAAAGTTATTGC ACGGGGATGCAACTTAGTAGAAGAGTTACGGGACTCCACTGCTCATGCAGAGATGATTTGTATCCGAGAAGCTTCAGGTCTTCTTCGAACATGGAGACTA TCAGACACTACACTATACGTCACGCTTGAGCCCTGTCCTATGTGTGCCGGAGCCATTCTTCAGGCAAGAATAGATACTGTTGTGTGGGGAGCTCCCAATA AGCTTCTTGGAGCTGATGGTAGCTGGATTAGGCTTTTCCCTGATGGAGGAGAAAGTTCATCTGAACCAAGAAATATACCACCTGCCCCAGTTCATCCATT CCATCCAAAGATAAAGATAAGAAGAGGAGTCTTGGCCTCGGAATGCGCAGACGCAATGCAGCAATTCTTTCAGCTGAGAAGGAAAAAGAAGAAAGAAGAA TCGTCAAATGACCAATCTTCCCTTCCTATTACTCACCACCACCCCTCCAAGTTTCTTAACAAGATTCATGACATCTTTCATGTAATGTTTTGTTTGTAAA ATAAAATTACAGACACACATTTTCCTCATGTTTTAAATGAGCAACTGAATGAAACTTTCAAACATGATGTATGGTCTTAGTGAAAGGCACAATGTTCAAT TTCTAACGTTATATTCATTCAGCAAAGTTGTACTGAACAATAACTTAGACGTTTCTATACCAACCATTGTTGTCAACTTTAACTTCACGTTACAGCTTTG AAAGTTTCTTTAGTAGGTATTGTAGGAATAACATTATTTGTACTATTATCTATATCAATTCTCTATGTCACTCCTTTTATTTTATTTTTACTTTGTTACA GGTGAAACCAAACAGCAGAAACAAGAAACAAAATAAGCAAAAGCTGCATAACGAGGATGCAATATGATAATCTGCACAGACATTTGCTTCACCAAGAACA TAATGGACGTGCACATTCCAGTTTCTCTATGACATTCCTTTGATTGGTTAAATAAAAATAAAATTATGCGATGTATATAATCTTTAAATTTTACTTTTTT GACTAATTAAACATTCCTTAAATTTTATTTGCTTGACTAATTAGGAGTTGCATAAAAGTGTTACTTGGTGAAGTTACATTGGAATGATGATAGACCATAG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_49557; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_138112
| Blastp | tRNA(adenine(34)) deaminase, chloroplastic from Arabidopsis with 35.71% of identity |
|---|---|
| Blastx | tRNA(adenine(34)) deaminase, chloroplastic from Arabidopsis with 35.02% of identity |
| Eggnog | deaminase(COG0590) |
| Kegg | Link to kegg annotations (AT1G68720) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460745.1) |
| Pfam | Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |