| Id Trinity | FTRINITY_DN55239_c0_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_137377 |
| Sequence | GCCTTCCTCACATCGACCTTACGTGATATTTTGTCATTTTTGTGGACAAAAATCAAGAGAAAACGGAAAGACCAAAAATATTCATGCCAAAAAACGAATA AAAAATCTAACCAGAAATCGCATATTTATATTCAAACAAACATATGAAGAGTCCTCAGCACAGGCTCATCTGCATCCACTCTCTCTTCCCTCACTACACA CTCACACACTCTCACACTATTCCGGTAACTTCTCCGATTATACGTTCCGGCAACCTCTCATCCCAAGCCATGGCAACATAATGACCGAAAACCACCATCG TTGTCGCCGATTACCATGTCGTTATCCTGCCCCGACCGCTTATCTGACTCTAACCTCATCTGCAGTGAGGACACCACCGGAATAATCTCCGGTGAGTCGC CCGAATTCTCATCCTCCAACATCGATTCCTCGCCGCCACCGCTGTCATCGTCATTGGAAGAGGATGAGTCCATAGCTGCGTTCATCGAAGACGAGCGCAA CTTCGTTCCCGGACTTGATTACCTTTCAAGGTTCCAGTCTCGGTCGCTCGATGATTCCGCCAGAAAAGAATCAGTTGCATGGATTCTCAAGGTGCAGTCT TATTACGGATTTCAACCGCTCACGGCGTATCTTTCCGTCAATTACATGGATCGGTTCTTGAACTCTCGGCAGTTGCCGGTGAGCTCTGTGAATTTTGTTT TCAGAAAATTATAATAACAAATGGAACTTGGAAACAGCTTGTGAGATTGACTTATTACTAAAATAACGCATGTGCGTGGAAAAGTTTTCTATGCAGTAGT TGTGACTGGCTTTTCTAACGTGAGGTGAATCTAGATGTTGTGTGTTATATTAATCGAAATATACGGCGATATACAAATGCAAGTTTTATGCATTTAATTT TCAGTTAAACAGACCTACTTTTAATTCCTGATAAGGACTAATGAAAATTTTAGTTTATATAATCGATTTTAAATTATTTAATGTTATTTGCCTTTGGAAA ATTATTTAATGGCGTTTAAATATATATTCGGATGCTGTCGTCTACCGTACGGGCATATTACTTGCTTTTTAGTTGTTGTATTGCTTGGTTGAGTACGTAC GAATATTAAGTGTCTATTACTGTTCAATCATTCTAATTTGCTTTGGATTTTTCACGGTTGAACATTCTCCATATTAAGCCCCCCCCCCCTAATATTTAAA ATATAAATTATACTCAAATATTTTTTTATTTATTATAATTATACCATTATACGATGCCTTTGTGCAGTAAACTTCCATTAAGAAGCAGTGTGAGTTACCA AACATCTCAGTTTTTAATAGTGAAAAGCAAATATTTATTGCAAAAGTTAAATTCAAACACTTACATTAAATACAACATTTTCAATTTAAATTTATTTTTG TATGGTCGTTTTTTTTACCCCCTCAATATTTTTATTTGCACATAAAATGATCCCATATGAGAATCATTTCCGGAAACTTTTTGCACTCTTATCCAGACAC GTGCGTCTCTGGTGGGATTACGTTTCATAAAGTTTGATTAATATTACACTCTTACAGTGTTATCGGTAAACACTGATAATCATCATAAATACTTTTTTAG AGTGAATTATGCCAATTACCTTTCTTATTACTCGGTGTATGATATAAATTTGTTTGCAGCAAACAAATGGGTGGCCAATGCAACTTCTGTCTGTTGCATG CTTGTCTTTGGCGGCAAAGATGGAGGAACCTCTGGTTCCGTCTCTCTTTGACCTTCAGGTTACAGGTCCGAAATACATATTTGAGCCCAGAACAATTCTA AGGATGGAATTACTTGTTCTAGGTGTTTTGGATTGGAGGCTAAGATCAATCACCCCATTTAGCTTCCTCAATTTCTTTGCATGCAAATTAGACTCAAACG GCACTTTTACCGGGTTCCTCATTTCACGGGCTACACAAATAATCTTGTCTAATGTTCAAGAGGCTAGCTTTCTTGCATACTGGCCATCATGCATTGCTGC CGCGGCCGTACTATGTGCAGCGAACGAAATTCCTAATTGGTCTCTCGTTAAGCCTGAGCATGCTGAGTCATGGTGCGAGGGGTTAAGAAAAGAGAAAATT GTAGGGTGCTACCAATTAATTCAAGAACTTGTTATTGACAATGACAAGAAGAAGCTCCCTAAAGTGTTGCCACAGCAGCTAGTGACAACTCAGTCCCCAA TGAGTTCAAGTGTTTCGTCATCCTCATCTTCTTCCTTCTCATTGTCTTACAAAAGAAGGAGAATAAATAACTGTTTGTGGGTTGATGGTGACACAGAAAA CTCCTAGTGATGAGAAAAGGAACAATCGTAATAAATGAGGAAAAAATAAATAAGGTGCTGGTCCAAAGTCGTCGGGAATAAGAAACCTAAATTTTTTTCA GAAGGTTTGAGGTAAAAATTAACTTGAGAGTGGTGCTGTACATTATAATATGCTCTTATATTTTAAGAGAGTTGAGGTTTTATTATCGTCGTTATTATTT TGTTGATGGGTATTGTCATTCATCAATGGCTTTGCATATTCCCAAGGAAGGGGATTTTGCAATATAAATATTCTATATTAAATATAATATGCTTTGGGAA AGTGAGCTTGAGAAAGGAAACAGATAAAGATGCATTTAATAGTTAGATCGTGCTAGTGTGGAAGAAAGAAGTGGGTATTTTGAAATACAAAGATCCATTG ATTACTACCCTTACTGATGAAAGAGAAGATGGTGGGACAATGCTCAAGAGCTTGGGAAGAAATGCAGGGTAGCATAGAGAAGATGTATCAAATTAGTTGG GGAACTTTGGGAGATTACAACTTTGAAGGTTTAGCTGTTTTTCCTATAAGTCAAGCTTTTCATCCTACCATTGAAGTTGGCCACATTTTGTGGACTTGTT TATGCATCCGCATGAAGACGCTAATGGTGCGTGCCATGCACGTGTTTATGTGTGACTTTTTTGGCAGGAACTGTTTTCTTTATTTATTATTCGGGCCATG AGTTCTGGCCTAACCATACAGGACCCATAGCCTGATGTCCGCGCGTGTTATGGAAACATGTCTCTATGGTTTTAATTTTTGGATTTTTTCATTTGTTTTC AAGAGTGAGGAGAACTTACTTTTAATAGGCTTAAGATATTAGAGAAAAGGTCTTTGGGGCCTTTTCCGGCGTGCTATGTTTTGAATATATTAGTAACAAC ACTATTTGATTTTATAGATTTCTACATTCTTCTCATCTCTCTTCTCTTTTATTCATTCACTTTATCTATGTGGAAGTGTCACCAGATTTGATTTATGCAT TATACTCCCAAATACTATTCAAATGGTTTAGTGACTTAAGTCATGTAACTTAATTCGTCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_49748; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_137377
| Blastp | Cyclin-D1-1 from Arabidopsis with 58.41% of identity |
|---|---|
| Blastx | Cyclin-D1-1 from Arabidopsis with 68.67% of identity |
| Eggnog | (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1) S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin(ENOG410XRKC) |
| Kegg | Link to kegg annotations (AT1G70210) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445494.1) |
| Pfam | Cyclin, N-terminal domain (PF00134.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |