| Id Trinity | FTRINITY_DN55239_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_137378 |
| Sequence | GCCTTCCTCACATCGACCTTACGTGATATTTTGTCATTTTTGTGGACAAAAATCAAGAGAAAACGGAAAGACCAAAAATATTCATGCCAAAAAACGAATA AAAAATCTAACCAGAAATCGCATATTTATATTCAAACAAACATATGAAGAGTCCTCAGCACAGGCTCATCTGCATCCACTCTCTCTTCCCTCACTACACA CTCACACACTCTCACACTATTCCGGTAACTTCTCCGATTATACGTTCCGGCAACCTCTCATCCCAAGCCATGGCAACATAATGACCGAAAACCACCATCG TTGTCGCCGATTACCATGTCGTTATCCTGCCCCGACCGCTTATCTGACTCTAACCTCATCTGCAGTGAGGACACCACCGGAATAATCTCCGGTGAGTCGC CCGAATTCTCATCCTCCAACATCGATTCCTCGCCGCCACCGCTGTCATCGTCATTGGAAGAGGATGAGTCCATAGCTGCGTTCATCGAAGACGAGCGCAA CTTCGTTCCCGGACTTGATTACCTTTCAAGGTTCCAGTCTCGGTCGCTCGATGATTCCGCCAGAAAAGAATCAGTTGCATGGATTCTCAAGGTGCAGTCT TATTACGGATTTCAACCGCTCACGGCGTATCTTTCCGTCAATTACATGGATCGGTTCTTGAACTCTCGGCAGTTGCCGCAAACAAATGGGTGGCCAATGC AACTTCTGTCTGTTGCATGCTTGTCTTTGGCGGCAAAGATGGAGGAACCTCTGGTTCCGTCTCTCTTTGACCTTCAGGTTACAGGTCCGAAATACATATT TGAGCCCAGAACAATTCTAAGGATGGAATTACTTGTTCTAGGTGTTTTGGATTGGAGGCTAAGATCAATCACCCCATTTAGCTTCCTCAATTTCTTTGCA TGCAAATTAGACTCAAACGGCACTTTTACCGGGTTCCTCATTTCACGGGCTACACAAATAATCTTGTCTAATGTTCAAGGTATACTCTTATAGCCATTTA AACTGATATTATTACTCTAATTTGTATTTTGCATAAAATCTAAAAGATTTGTTTACTTACCTTTTCAATAAAAGTTACCCTCTACTGTTAAGAAAACCCT TTTAAAAATGATCGAAAGTAGAAAATGGTACGAATTTTGAGCAGTAACTTAATTAATTAGTTTTCTGTTTGCATATTTTGTCTAGAGGCTAGCTTTCTTG CATACTGGCCATCATGCATTGCTGCCGCGGCCGTACTATGTGCAGCGAACGAAATTCCTAATTGGTCTCTCGTTAAGCCTGAGCATGCTGAGTCATGGTG CGAGGGGTTAAGAAAAGTAAGCAGTGTAGTATATATTATGGAAAATTATGATGAAAAAATGATATGTATAGGTTGATTTAGATGTTTAAATGAAAAAAAT CAGGTTAACACATCCGATTGTTGCAGGAGAAAATTGTAGGGTGCTACCAATTAATTCAAGAACTTGTTATTGACAATGACAAGAAGAAGCTCCCTAAAGT GTTGCCACAGCAGCTAGTGACAACTCAGTCCCCAATGAGTTCAAGTGTTTCGTCATCCTCATCTTCTTCCTTCTCATTGTCTTACAAAAGAAGGAGAATA AATAACTGTTTGTGGGTTGATGGTGACACAGAAAACTCCTAGTGATGAGAAAAGGAACAATCGTAATAAATGAGGAAAAAATAAATAAGGTGCTGGTCCA AAGTCGTCGGGAATAAGAAACCTAAATTTTTTTCAGAAGGTTTGAGGTAAAAATTAACTTGAGAGTGGTGCTGTACATTATAATATGCTCTTATATTTTA AGAGAGTTGAGGTTTTATTATCGTCGTTATTATTTTGTTGATGGGTATTGTCATTCATCAATGGCTTTGCATATTCCCAAGGAAGGGGATTTTGCAATAT AAATATTCTATATTAAATATAATATGCTTTGGGAAAGTGAGCTTGAGAAAGGAAACAGATAAAGATGCATTTAATAGTTAGATCGTGCTAGTGTGGAAGA AAGAAGTGGGTATTTTGAAATACAAAGATCCATTGATTACTACCCTTACTGATGAAAGAGAAGATGGTGGGACAATGCTCAAGAGCTTGGGAAGAAATGC AGGGTAGCATAGAGAAGATGTATCAAATTAGTTGGGGAACTTTGGGAGATTACAACTTTGAAGGTTTAGCTGTTTTTCCTATAAGTCAAGCTTTTCATCC TACCATTGAAGTTGGCCACATTTTGTGGACTTGTTTATGCATCCGCATGAAGACGCTAATGGTGCGTGCCATGCACGTGTTTATGTGTGACTTTTTTGGC AGGAACTGTTTTCTTTATTTATTATTCGGGCCATGAGTTCTGGCCTAACCATACAGGACCCATAGCCTGATGTCCGCGCGTGTTATGGAAACATGTCTCT ATGGTTTTAATTTTTGGATTTTTTCATTTGTTTTCAAGAGTGAGGAGAACTTACTTTTAATAGGCTTAAGATATTAGAGAAAAGGTCTTTGGGGCCTTTT CCGGCGTGCTATGTTTTGAATATATTAGTAACAACACTATTTGATTTTATAGATTTCTACATTCTTCTCATCTCTCTTCTCTTTTATTCATTCACTTTAT CTATGTGGAAGTGTCACCAGATTTGATTTATGCATTATACTCCCAAATACTATTCAAATGGTTTAGTGACTTAAGTCATGTAACTTAATTCGTCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_49748; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_137378
| Blastp | Cyclin-D1-1 from Arabidopsis with 69.48% of identity |
|---|---|
| Blastx | Cyclin-D1-1 from Arabidopsis with 67.92% of identity |
| Eggnog | (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1) S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin(ENOG410XRKC) |
| Kegg | Link to kegg annotations (AT1G70210) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445494.1) |
| Pfam | Cyclin, N-terminal domain (PF00134.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |