| Id Trinity | FTRINITY_DN55239_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_137364 |
| Sequence | ACAAAGTATGAAATTTAAGGCAATAAAAAATTACAAAGAAAAACTTAAAGGAAAACGAAAAGAAAATCTGATCCAAGGCATCGCATATTTATATCGAAAC AAACATATGAAGAGTCCACAACACTGCTTCTTCTATAGTCACTCTCGCTTCCTACACTGCACACTCCCACACTCTCACTTACTATTCCAGCGACTTCTCC GATCTCATTCCGGCGACTTCTTATCCCAAGCCATGGCAATAGAATGACGGAAAATCACCATCGCCGCCGCCGATCATCATGTCCTTATCCTGCCATGATA TCTTTTCCGATTCTAACCTCCTCTGCAGCGAGGAAACCTCTGGAATCCTCTCCAGAGAGACGTCGGAATTCTCCTCCCCCGACATAGATTTATCGCCGCT GACGATGTCATCGTCGGAGGAGGAAGAGTCTATAGCCGAATTCATCGAAAACGAATGCTACTTCGTTCCTGGATTCGATTACCTTTCGAGGTTACAGTCT ACATCGCTCGGCGCATCCGCCAGAAAAGAATCAGTTGAATGGATTCTCAAGGTGCAGGCTTATTACGGTTTTCAACCGCTTACGGCTTATCTCTCCGTCA ATTACATGGATCGGTTCTTGAACTCTCGGCGGCAGTTGCCGCAAACAAATGGGTGGAAACTGCAACTTCTCTCTGTTGCATGCTTGTCTTTAGCGGCAAA GATGGAGGAACCTATGGTTCCGTCTCTCTTGGATCTCCAGGTCGAAGGTCCCAAATATATATTTGAGCCCAAAATAATTCGAAAGATGGAGCTGCTTGTT CTGGGTGTTCTGCATTGGAGGCTAAGATCAATTACCCCGTTTAGCTTCCTCGGATTCTTCTCATGCAAGTTTGATCCAACCGGAATTTTTACTGGGTTCC TCATTTCACGGGCTACCCAAATAATCTTATCTAATGTTCAAGAGGCTAGTTTTCTTGCATACTGGCCGTCATGCATTGCTGTTGCGGCCTTTCTATGTGC AGCTAACGAAATTCCTAATTGGCCACTCGTTAAACCAGAACATGCCGAGTCATGGTGCGAGGGGTTAAGAAAAGAGAAAATTATCGAGTGTTACCAATTA ATGCAAGAACTTTTTATTGACAATAACAAGAGGAAGCTCCCTGAAGTGTTACCACAACTGCGAGTGACAACTCAGTCCCCAATGAGGTCAAGTGTCTCAT CATCTTCTTCCTCTTCTACTTCCTTCTCCTTGTCTTACAAAAGGAGGAGAATAAATAGAAAGTGTTTGTGGCTTGATGGTGACAAAGAAAACCAGTGAAG AGAAAAAGAGAAATAGTAATAAATTAGGAAGAAAAAAAAAGAAATAAGGCGGTGGTCCAAATTAAAGTAGCTAGTCTAGAATAAGAAGCCTAAAAAATTT GAAGAGGGTTTTTGAGTTAAAAATTTACTTGAGTGATGGTGTAGTTGCTTACATAATATATATGTTATAATATACATAGACTACTCTCTTATTTTATGAG AGTTGTGAGGTTTTATTATAGTCATTATTATGTTGTTGTTGATAATTGCCATTCATCAATAGGCTTGCAGATTCCCAGGGGGGATTTTGCAATATAAATA TTCTATTAAATAGGAATGCTGTGTGAAAGTGGGAGAGAGGAAATAGACAAAGATACAATTAATAGTTAGGTGGTGCAAGAAAGAAGTGGGGATTTTGGAT TTCAAAGTTGCGCTGGTTAATGTCTTATGGTGAAAGGGAAGATGGTGGGACACTGTTCCAGGACAACAAAACAAGAGTAACAGAGAGCAGTTGAATTTGA AGTTTGAGCTATTCGCTGTTACATTTGTAAGTCAAACTTTCCATCCTGGACAGAATCATTGCTTCTCAACTTAATTGAATTACTTTGAAGCTGGCTACAT ATTGTGGACTTCTTTGTGGTATACGCATGAATAGGCTTCTGGTGCAGGTCACGCACGTGTTAATGTGATTTTTTTCTGCTATATTTTGGCTGGAACTGTT TTCTTTTTCTTTTTCTTTTTTGGCCATGAGTTCTGGCCTAACCATACAGGACCAGTGCCTGGTGTCGACGCGTGTGATGGAGACACGTCTCTATAGTTTT TATTTTTGGATTTATTCATTTGCTTTCAAAAGGGAGGAAAATTTTCTTTTAGTGGCCTGTGCCTGATTGGCATAAGAAATGAGATAAAAAAAGTCTTTGG GGTCGTTCTTAGCTGCTCTGTGTATTGAATTCATTAGTAAGAATACTATTATTTTCATAAATTTCTATTATTTGCATATATATCTCTAATACATTCGTTC TCTTTTCACTTTATATCTTGGGCACAAATTCACTCTGAGTCATTAATTAATAATGCCCAAATATGTGGATTTGACATTCGTTATTACTACTGAGTTAAAA GAAACTTTATCTTGAATATAGTGAAGCATTTCTCAAGGGGATACACTACTAGGTCCCTCTAGCAATAAAGG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_49748; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_137364
| Blastp | Cyclin-D1-1 from Arabidopsis with 60.54% of identity |
|---|---|
| Blastx | Cyclin-D1-1 from Arabidopsis with 60.75% of identity |
| Eggnog | (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1) S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin(ENOG410XRKC) |
| Kegg | Link to kegg annotations (AT1G70210) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019424251.1) |
| Pfam | Cyclin, N-terminal domain (PF00134.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |