Id Trinity | FTRINITY_DN55293_c2_g1_i15 |
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Name Transcript | Ll_transcript_139358 |
Sequence | CTAGTTATCTACCATCACCACTTTAACTGCCTTACCCACTTTCCTTCTCTACACATCTCCCCTCAAACTCAATCAAAGTAAGCACTTTTTTTGTTTGTTT TTATCAATCTTCTTGTTTCTTCTGTCAAAAGAGACATCAAGGTTGAGAGAAGAAAAGGGTAGTACTATTACTACAACTACTACTCTCTCAAAGCCAAAGC CAGTAGTACCAACTACCAAGTACAAGTAGCAACTTAAGGAATATCCTCTTAGATCCCAACCCAATACTTTACCTTATTTATACTAATTTCCTTTCTTCTT ATTATTATTATTTATACACAATACATCAAAAACACTTCCTTTGCACTTTCTTCTCTCTTTCTTTTGGTCCAAATTAATACAAAACAAAAACATCTTACCT TTGTGTCTGAGTTTCCAACTAGGTATTTGATATGCAAGTGTCAGAAATCCAACAACTTCAACTCCAACTTCAAGTGAAACACCACAAACAACATAATCCT AATAACCAAGACATACCCATGTGCCAGAAGAAGATCCAAATTCAAGATGAGAAGAAGGTGATTGTGGAAGGAGATGATTTTCTCGTACCACCCCTCAATT TTGCAATGGTGGATAGTGGCATTTTTCGTTCTGGATTTCCTAAACCAGACAATTTCTCCTTCCTCCAAACACTTCGCCTCCGCTCTATCATATATCTGTG TCCTGAACCATACCCAGAGACCAACTTGGAGTTCCTCAAGTCTAATGGGATCAAGCTTTATCAATTTGGGATTGAGGGTCATAAGGTTAATATTTTTTTG ACCAATCAAATACGGCGGCGGCGAAACCGCTGAAGTGTTCTGAGAAGAACATATGCAGTGGTTCTGGATGACAGATGAAACATAGTCACACATGAAGGTT ATTTTTTAAGGTGAAAATTCAGTAATTTAAAAGTTCTCATCTATTCAAACCTTGTTTTTTTAATAGATGAAGATAACCTAACTGGTTTTCCCATCAAAAC TCCTCCTCACTCCCATAAATTAAGATCTCCATTTATTTTATTAAATCACACTAATTAGTGAATGCCCTCACTCTATTACAGACATTGAACTAATGAGCTT AAGGATATTCAAATAGATCAAGCTTTAATTTTTTTATACTAAAAACCACAATTGATTATGCCCACAAGAATCATGGGATTGTAACTTATTTGGGCTTGAC TTTTTTCCATTTTGGGTGGTCTATGTTGGGTGATTGGGTCTAGTAATTTTGTGTTGACGATGCTTGTTCCATGTCTTGATAGTTTGTACAAAAATCAATG GATATCTAATCCACTTGACATCTCCCTTTCATCCTTTGTACTCTATGCTATTTTTTTCTTCAAGTAGGCGTGGATAATAATTAGTGACTTGGTGAGATGG GGCCATTACGTGAATGCTGTGAAGTAAAGTACTGTTTAATCAAAGAGGATTTTATAAGGTGTAGCAGGGCCATGGGAGGGGGTAATGGGGTTGTAAGGAT GCATGGTTGTTTATATTATTATTGCTTGATTCTTTGGATCTAACTCTTTAGAGTGTCCAAACTTTATATACTGGTTTTGAATGATATATGTACTTGTTTC CAAACTTTCGCTTGCTAAATTTATCATCACAGCTTTTCAGATATCATCACAATATTATCATGTCATTTGTGTTCTGGTTACTATTGTCGATTAGATCCAT TATTATGATTTTAGCATATTCTTTGGGTCTAAGAGCCCTCTCTTCAAAACTCAAATATCCTCATTTTTATTAACTTTCAAAAGTATACCAACTTTGGACT ACGGAATTCTTGGTCAATGGAATCCAAGCTGGCATTTCAAGTTTTTCCTTGTGAATAATTAATGTATTGGACTATCGGAGATCGTTGATTATATACTTGT TGTCTGTATATGGGACCATTATTGTGTGTATATGTCAAAAATCTATTCTGTTCAAGCAGAAATTTGCCCTCTAATAATGCAAGTATACGGTAAAGAAACG GAACAGAATAAAATCATGATCAACTCAAGAAAGACAAGGAGTTATTATTAGAAAAAAACATGGTTAAATTACTCTAGGCCATGAACTTTGTTTTGGATAG TAAATTACTCTTCAAGGAAAACTAGTACTTTAATTGAAGCCACCCTAGATTATGTTATCTCTAGTTTACCTTCCATTCCTTAATAAATGAGACTTCTATC TTATGTTGTTGGCATCGCATGTTTTAATTGAGAATGTCAAATTGTATTTAACCTTATGAAATTTGTGCATACAGGAGCCTTTTGTAAACATCCCAGAGGA CACAATCCGTGAAGCACTAAAAGTTCTCCTTGGTATGCTAAAACTCTTCACTTTTATCTTTACCAAAGTTTGAACTACTTCTTTTGCTAGGAGTAGTAAC TTTTGGTGATTTAATAATGTAGATGTCAGGAACCACCCTCTCATTATTCACTGTAAACGGGGAAAGGTTAGCAGCTTCTTATTTTTTTGTCATTTTCTAA CAATTTTGTTTACAACAGACAACTTAGGACAATTTTTTAGGGTATTGTACTGTGTTATAAAGCCCAAAGTTGTCCATTGTGTTGTACATATAACATAAAC TTAGATGTTTCTTGTTAAAATAAGTTACATTCTTTGCTTTTTTTTATCATATGCATGCAGCACCGAACGGGTTGTTTAGTAGGGTGCTATAGAAAATTGC AAAAATGGTGCTTGTCATCAGTGTTTGATGAGTACCAGCGCTTTGCAGCTGCCAAAGCAAGAGTTTCAGATCAGAGGTGATGGAATGGGTGATCAGAGAG AGGCCCTACAGACCTAGGGAACTTGATTACGCTTATCTTATTGAATTTACAACTAAGCTTCACGGAATATCACATGGTGAGAAGCTCATATCTAACATTC CTTGTGAATTTCAGAATGAGTTGCTCTACAACAATCTAGTGATTGCATGCCTGGATAAAGGTGTCATAAGGCTCTCACTCGAGTACATGAAAAAAATGAG GGAATTGGGTCATCCCATCTCACACTTGGTCTTCAACCGCCTCATAATTCTGCATTCCTCACCAAAACGCAAAAAGATGATACCCAAGTTGCTTACTCAA ATGAAGGCTGACAAGGTCACTCCTCACGTGTCCACATACAATATTCTGATGAAGATAGAAGCTAATGAGCATAATCTTGAAAACTTGGTGAAGGTGTTTG GTCGTATGAAACAAGCTCAGGTTGAACCAAATGAAATATCTTACTGCATTTTAGCTACTGCTCACGCAGTGGCCCGATTATATACTGCAACTGAATCCTA TGTTGAAGCTGTGGAGAAGTCTATTACAGGGAATAACTGGTCAACATTGGATGTCTTGCTTATGTTGTATGGGTATCTGGGGAACCAAAAGGAGTTAGAG AGAGTTTGGGGCATCATTCAAGGGTTGCCCTTTGTTAGATGTAAAAGTTACATGTTAGCCATTGAAGCATTTGGTAGAATGGGACAGCTACCCCGGGCTG AAGAACTTTGGTTTGAAATGGAATCCAGAAAAGGATTGAAATCTGTAGAGCAATTCAATTCAATGATAACCGTTTATTGCAGACATGGATTTGTTGATAA AGCAGCTAGACTGTACAGGAATATGAAGACAAATGGATGCAAACCAAATGCCATAACTTATCGTCAGCTCGCTCTAGGCTGCTTGAAAGCAGGTATGACA GAGCAAGCTTTGAAGACCTTAGACTTGGGCTTGCGTTCGACAATATGCAAGAAAGTTAGAAATTCAACCCCATGGTTGGAGACAACTCATTGTATTGCTG AAATTTTTGCTGAGAAAGGTGACGTGGGAAATGTTGAGAGATTGTTTGAAGAATTTCATAAAGCTAAGTATTGTAGGTATACCTTTGTATATAATACCCT GATTAAGGCTTATGTAAAAGCCAAGATTTATGATCCAAATCTTTTGAGAAGGATGATTCTAGGAGGAGCTAGGCCAGATGCTGAAACTTACAGTTTATTG AAAGTTGCTGAGCAGTTTCGGACCTAATTTTGATTGGTAATTCATGACAAGCTTTGTTTGTGTATCTTTCTTTTTGTCTTTCTACTTACTGAAATTATAA TGTGCAATCTGATTATGCAACAAGATTCATCATGATGATGAAAGAGTATTAAAGAACATCTACCATAAGTCAGGATTCTGCTCAATCTTCTGGCTGTTGA GTCCTATGCTTAGAGAAATTCTTAGTTGTTTCTGAATTTATTAGACATTGTATCATTTAACATCGAGTAAATTATACTTATATCTTTGTATTCCCGTATA TTTTAGTTGAATTATACAAATTATTCATCTTTTT BLAST |
Tissue | flowers |
Gene name | LI_gene_50196; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_139358
Blastp | Pentatricopeptide repeat-containing protein At1g07590, mitochondrial from Arabidopsis with 66.43% of identity |
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Blastx | Pentatricopeptide repeat-containing protein At1g07590, mitochondrial from Arabidopsis with 66.35% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT1G07590) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019455863.1) |
Pfam | Pentatricopeptide repeat domain (PF13812.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |