| Id Trinity | FTRINITY_DN55350_c2_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_65743 |
| Sequence | CTTCCAAACAATTACAAATAGTAAGAATAATAAGAATAAGAAACAGTGAGTGATGATGGCACTTCATAAAACTTATCCATTTCTCCATCATTCTAGATTT CGCTGTATGCTCCATCAAATCCCTCTCTCTCCTTCCCTCACTTCTCTTCTCTCCGCCACCACCACTTCCTCCTCCTCCCTCCACGGTGCTGTCTCCTCCG CCATCACTCATGTCGCCGTCACCGCTCTCGCTATTGCTTCCGGTGCTTGTCTTTCCACCAAGCTTGATTTCTTATGGCCTAAATTGGATCAACAACCAGG TACCATCATTCAGGATGGAGTAGATGTTACTGGCTACCCTATATTTAATGATGCAAAGGTACACAAGGCTATAGCTTTTGCAAGAAAAGCACATCGCGGC CAAATGCGCAAGACTGGAGACCCTTATTTAACACACTGTATCCATACCGGAAGAATTTTGGCAATGTTGGTTCCATCAAGTGGTAAACGAGCTGTTGACA CAGTTGTGGCTGGTATTTTACATGACGTGGTTGATGATACTTGCCAAAGTCTGCAGGACATTGAGGAAGAGTTTGGGGATGATGTGGTCAACTTGGTAGC CGGTGTTTCGAGATTGAGTTATATAAATCAGCTGTTACGCAGACATCGAAGGGTAAACGTGAGCCAGGGCGTCCTAGGCCAAGAAGAGGCAAGTAATTTA CGAGTGATGCTTCTGGGAATGGTTGATGATCCGCGTGTTGTGCTCATCAAGCTTGCCGACCGTCTTCACAACATGAGAACTATGTATTGGCTCTGATCTT CATTTTTTTGCCTTTATGCCTAAGCAATTCCAGTCTTCGTTATTTTTCCTTTTGTGTTCTTCACTTCATAACGGTTAATCTTTAAAGGTGAAGGAAACAG TTTCTTACTCTTATAGGTTTTCTTAGTGTTTAATTGTTATTAGCTGTGAGAGTTTACTTCCTTGGTATAGCATCATCTTTATCCATTAACCTGTAACATG TGCAATGTTTTTAACTTTTTGGCTAGACAGTTTAGAATTTTAGGTATGTTGCATAGGCCATTTCATTTTTTGATAATCTCTGTTTTGCAGTCATGCTCTT CCGTTGCAAAAGGCTCAAGCTGTTGCAGAGGAGACCTTAATTATTTGGTGTTCTCTTGCTTCAAGATTGGGTCTATGGGCATTGCAAGCTGAACTGGAAG ATCTATGCTTTGCTGTTCTTCAGCCTCAAGTATTTCAAAAGATGCGAGCTGATCTAGCCTCCATGTGGAGCCCCACTTGCAGAACAGAAAACCCTAGAAG ATTCTCTGTAAAAGGAAGCTTGATACCTTTGGATGAGAACAGTTCAACTTCTTCCAGCAATGAATCCTTGACATTAAATGAGGAAGTCTCAAGTATGAAG GATCTTTTGGAAGCTGTGGTCCCATTTGATATATTGTTGGATCGGAGAAAACGGGCTAACTTTCTCTGTGGTATTGGGAATAATCTGGAGACATGCATGA AACCGAAAGTTGTTCAGGATGCTGGGTTGGCTTTGGCATCATTGGTAGTTTGCGAGGAAGCACTTGAGCGAGAATTGATTATATCAGCTTCTTATGTTCC GGGGATGGAGGTCACATTATCAAGCAGATTAAAAAGCATGTACAGCTTATATAGTAAGATGAAGCGAAAGGATATAAGCATTGATAAAGTATATGATGCA CGTGCATTAAGGGTAGTTGTAGGAGACAAGAATGGAACATTACATGGAGCTGCTGTTCAGGGTTGCTATAGTCTTCTCGACATTGTACACAGGCTTTGGA CTCCCATTGATGGTGAATTTGATGACTACATCATCAATCCAAAGCCTAGTGGCTATCAGTCCTTGCACACTGCTGTACAAGGTCCTTGCAACTCTCCTTT AGAAGTACAAATAAGAACACAGAGGATGCATCAGTATGCTGAACATGGACTTGCTGCACACTGGCTTTATAAGGAAACTGGTAATCCTTTTTCATCTATA GACAGCATGGATGAACCTGAAACAGAAGAATCCTCTTATTTCTCCAGAGATATAGAAGAGGGGAATTCTTCAGATATTTTATTAAGTAAATACAAGTCAT TGAAGGTTGGACATCCAGTCCTCAGAGTAGAAGGAAGTCACTTACTTCCAGCTGTTATCATTAGTATAGAAAAGGATGAAAGAGAATTGCTAGTTGCTGT CAGCTTTGGGCTAGCAGCTTCTGAAGCCGTAGCTGATAGAAGATCTTTCCAGATTAAGCGATGGGAAGCTTATGCACGACTATACAAAAAGGTGTCTGAT GAATGGTGGTTTGAACCAGGACATGGGGATTGGTTTACTTGTCTAGAGAAATACACACTATGTCGAGATGGCATGTATCATAAGCAAGACCAATTTGGGC GTCTACTGCCAACATTCATCCAGGTTATCAATTTTACTGAGCAAGAAGAAACTGAATATTGCGCTGTAGTGTCTGCTGTGTTTGAGGGAAGGCAGGTGGA TTGTATTACATCATCACAATCAAAATTTGATTTTGTTGCATCAACTTCTGAGGAAGCTAGCATCAATAACAAGGTTTTTCAGCAACTAACTTGCATTCTG AATGAAATTTGTATTCGAAATTGCTTGTCATCATTTACTTCTGTTTCTTTTCTTAACAAATGTGAAATTTGCTCTGCCTAGATTTCAATTCTCTCATTTG AACTTTTCACATGACTATGATAATATAAACATAGGTACAAAGGCAAAACTAATGAACTTGTTGACATGAGAGAATCCCTCAGCAAAGCCATTAAGATGGT ACAAATCAATGCCTAACCTGCATAGTTGGCATAAATGCAGCTATGAAAGTATTAAGTTTGTCTGCCACCATGCAAATTGAAAGTATTAAGCTGATACCCT TCTATGTATTCTAGTTGACTGTATGTATTCATCTTTTAGGTGCAACTTTTGAGAACAATGCTTTCCTGGGAAGAACAATTGCGATCTGAAGTAAGTATGA ATGAAACAAAGCATGACGCAAAGCTTTATGATCTTCCGGGCTCTCCAAACCTTAGAGAAGTGGTAATTATATGTTGGCCTCATGGTGATATTATGAGGTT AAAAGCTGGTAGCACAGCTGCTGATGCTGCTCACAGATTTGGTTTCGAGGGAAAGCTGGTTTTGATCAACGGCCAGTTAGTACTGCCCCATACCAAGCTC AGAGATGGTGATGTTCTTGAAGTAAGGATCTAAATCATTCATTCGCAACATTACTGTTAAAAAAATTGTAAATATTTTTTACGGGTTCTTTGTAATTAAA GTTGGTGGGGGCAGAAATAGGCAGATTTTCTTGTATGTTGGGGGATTTGGTAAAGTAAAAAATGTTCTTTTAACCAAATTTCAAATTTGGTGGTTTTAAA CTTAATTCCATGGATATGTTGGATAACCACATTTGCCATCATATAATTACCCTTCTATGTATTCTAGTTAACTAGCTTACTCACATATGTTCACTATTGT AGCTACTATCTAATTCCAATC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_50612; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_65743
| Blastp | Probable GTP diphosphokinase RSH2, chloroplastic from Oryza sativa with 48.51% of identity |
|---|---|
| Blastx | Probable GTP diphosphokinase RSH2, chloroplastic from Oryza sativa with 48.51% of identity |
| Eggnog | In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance (By similarity)(COG0317) |
| Kegg | Link to kegg annotations (4345756) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423473.1) |
| Pfam | Region found in RelA / SpoT proteins (PF04607.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |