| Id Trinity | FTRINITY_DN55356_c0_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_65086 |
| Sequence | CACCTATATTAATAACACGATTCAATATTAAACCTAACGAATATTCATGTTAGCCTTCTTCGTATTACTCGGATTAATTCGTCTCTCCCCTAATTCAAAC CATGTATGTATGGAAGCCTCAACCGATGACGTAAGAACAAGGTGTTTTGACCCCATAGTATCTTCCACCATGTTCAAATTCTGAAAACCAGAAGAAGAAA CCCTAATCACGATTCATCACTCCAATTAAACTCTAAACCAATCACTTCACCGCAATCATCGAATCGATTCAACAATGTCTTCATCATCGAGCAGCGGTTT AACATTCAAGCTTCACCCTCTGGTTATCCTCAACATCTCAGACCATTACACTAGGGTCAAGTCTCAGATGAACCCTCCAATATCACCTCACAACGCTACC ACCACCAATGGCGGCGACGCTGTCTGTTCTTCTACTCCGCCGCGGGTCTATGGCTGCGTTATAGGGGTTCAGAAGGGTCGAACCGTTGAGATCTTCAATA GCTTTGAGCTTCTCTATGATTCTTCCAACAATTCCCTTGATCGTCCGTTTCTTGAGAAGAAGCAAGAGCTCTATAAGAAGGTTTTCCCACACTTCTACAT ACTGGGATGGTATTCGACTGGGAGTGATGCAGAAGAACCAGATATGCTCATTCACAAAGCTGAGGTTCTGTTTGGCTCTCAAAAGAGGTGATAATATGTT GAAATTCCTCATTTTAGCCATCAAGAATGGAATCAATGTGTTCTGCTTGTGAAACTGTGCTGCTAGATGATATGAGGAGATCCACAAGGGTTTTGATACA CATGAAGTAATCCATAGTTGAGCTAGAACCTTGTGTGATAGATCCTAATTGAGAACGAATGTGACGATCCATGGATTTGGTATGGGAGGGGCAGAAAGCA TAAACTTCTTGCTATAACTGCCAAGAGTTATAACAACCAACAACATGTGGTTGTAGGCCTTTAGAAAACGAGTTCAGGAGTCAAGAAAAAATGGCTTGGT CCTGTTCCTCCCGTAGTAGATAGGCTGGGTTAATCTGATTGATTAATCTATCATCCTCAGATATAGAAATCTAAATGAAATTTCAGTACCTTTACGAACT TTGAGGTTTGATTTGAGATGATAATCACATTCATGAAGTGTTGCCACACCAAAAAATTAGTATCGATCATTTTCATTGACGGCATTGGAAGCTTGAGCTG CACTGGCACAGTGTGAAGTGGTACAACACTGGAGAATAGCGGTACTGAAGTCATATGAGGCGGTGGTGATGCCATATGGGGCGTTGTTCCAGCAGGATCA GTGTTTGTGGCCTTAACCATTGCTCTCTGATACCATTTGAGAAGTTAGAAAACAAAGGAAAATACAATGGAAACCGGAAAGAAAGAGAAATAGAGAAAGG GGGAGAGAAAGGTAACTGCTCTGTAACTGTTTTGTTTTCTATTATTAGAAGTAAATGATATAGTTACAACTGAGAGCTATTTATAGGAATAGCTTGAACT CTATATTCATAACTGCTCTGTTAGTAGTTTAATTGCACAACTGTCATATGTTTTGACAGCTTGGACAATTTGTCTATGTCTACAACCATAAACTCTATCC TACTACATAGTATTTATCTCCAGTAAGTGGAAGGATAAAACTGAGAGTGGATAGGTGTAGACCAAGTGGCAGGACCCAAAATTGAACCATGTTAACTGCA TGAGTATGATGCATGAGGTGGGACAGCCCCATATAGGATGGATGGGAATGAGTGGAGTGTGGAGGAAAGCCAGGAATATTGTATTGTGAAGATTGAGGAA CAAACCCAACCCAACAGGACTGGGACTAGGTCTGGTAGAAGAAGCTAAAACCTGTTGGGACCCCATGACAAGCTCAATAGATGCCAGCATTGCAGTATCT CATGTCCTGGCTTGTTGGACTTCATCAGTTTTTGTACTCATACTCGATCAATTAAATTAAACCATTTTATTTTCCTTAGTTTCTATCCTTTGGGAAGGGA TGGAGTATTTTCTCTCTTCATTTGTTGGCTTTAAAATGGGTTGTAGTGAAAGCCCATGAAACAATAGTGGATGTAGATGATGGTAGGGTGGGTGAGGTTA TGGGAATACATTTGGTGTGCTGATGGGCCTCGATATGGTTTCCTGGTCTGTAGTAGCTGGACAAAAATGCTTTGGTGGTTGGTATTAGTTCATTAGTTAA TGGGAAATGTTTTGGAATGTGAGATTGTTTAGAACTCTTGGAATATGAGCTGCTCTGACTCAATGGGTACCTAAATTTTTCGTTCAGGAATCATAAGCAG TATTACATAGATGACAATATGTTGGAAGATGGAGAAAATAATTACGAGGGTCAAATGCTTATTACAGCTGCATACCATGTGTCGACCCTTTCCCTTCAGA ACATTTATGTGTTGGGAGTTTCACCAGAACTATGGCTGTTGTCAGTTGGTACAGGTTATATATAGAGGATGGAGTAATAATTGAATGTGTGCTTACTCAT TTTCCAGGATACTGTCTTTCGCATGTCTCTTTGACACCTGTTATTCCTTGTTTCTCTAATGGATATCAATGAAAGTCCAGTTTATCTTCTTCTCAATCCT TCAATCAATCATTCTCAGAAGGATCTCCCAGTCAGTATTTTCGAAAGCGGTATGTAATCTCCATGATTGTATCATCTAGTATGTCATCATTCTTTCAACC TGTTGTTGCTCAGGTGCAGGATCTTTAATATACCTATACAGTATCAAGGAAATGGGTTCAGTTAATTGTACTTCATTTTTATTCTTTTTTCACTGAAGTT GTACCTATTTTGGTACAGAATTAATATTTTGTCCTGCATAACGTAAATCCTTTCTAATTAGTTTTATAATGCTATATTCTATTTTGACCTACATACTTGG GTGGCTTGTGAAATGTATTTACAATAAGCAAATTATGTTTGATAAATATGATTACTGACATTAAATTGATCACAGCTAATAAACACAGCATAGTTTCTTC AATATGGTGGTCATGACATCCTAATATAGCTCATACTTCCTGCAGTGCTTCCCCCTGAATTATTGTTTTTTATTTGTATCAAGACATTTGTGTCAGACTA AATAGTCATGCATTCCAACTTTCAGCTTTCTGCTTTTCAAAAATAAAAATCCTGTATTGTTTTTTTCTTCATTTTTAGTCAAATTTTTATTATCTTTTTG CCTGCCTCTTGTGCTGAGCCAATGAATTATGTGTTATTGCTGTTCCTGGCTATTGCATTACAGAACTGCATGTAATAGATGGGATTCCACAACTTATCTT TGTTCGCTCAAGTTATACTATTGAGACTGTTGAAGCAGAACGGATCTCTGTTGATCATGTTGCACATCTTAAGCCATCTGATGGTGGTTCGGCTGCTACA CAATTGGCTGCTCACCTTACTGGTATACACAGTGCTATCAAAATGCTTCATAGTAGAATTAAGGTGTTACATCATTATCTTCTTGCAATGCAAAAAGGTG ATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGAAAATTTCAAGATGATTTCTTAATGGA ATACAATGACACCTTATTGATTAGTTACCTTGCCATGCTGACCAACTGCTCAAGTGCTACAAATGATCTGGTGGACAAATTCAATACTGCATATGATAGG CATAGCAGAAGGGGTGGACGAACTGCTTTTATGTGAAAGCTGTTTGGTTGCTCATTACTTTTTGTCTTGCAGCCTCAAACCACTTTTCCTTTAGGCATAG CTTTTTTTGCATTGGATTTGAAGAGAGAGAAATGAATAGAAAGAAAGTAAAAATGTAGAAAAGGATGACCCCTCCAACCAAAAAAAAGTATATATTTTTT CTGCATTTCTAGTAAAAAATCGTTTGCCAAGTTGTTGAGATAAAAGGGTTCAAGACATATTGTGAATTTCCATTATGAATATTTGTTGAGTTACCATCCC ATCCTAGTGTTTATTTGGTAGCGACACTTGTTGAGAGCGGTAACCATGAACTTTGAAAGTTGTTAGTTTCTCATCAAAATCAAATTTATTTATTTTTCTA TTCAATCCCAATATACGCACAACAATTTTATTAATTCACCAGTTTTATTTCTCTCTATTAATATTATATC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_50654; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_65086
| Blastp | COP9 signalosome complex subunit 6a from Arabidopsis with 76.15% of identity |
|---|---|
| Blastx | COP9 signalosome complex subunit 6b from Arabidopsis with 81.65% of identity |
| Eggnog | Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity)(COG1310) |
| Kegg | Link to kegg annotations (AT5G56280) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419995.1) |
| Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease (PF01398.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |