| Id Trinity | FTRINITY_DN55399_c3_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_63609 |
| Sequence | GCCACTTGAAAGCTCGGTGGCATATACTCCTCCCCTGGACAGTGTTAGTAGCAATGAAAAGAGTAGAGATTGTTACAACGTTGTGTTTGTGATATGCAAT AAACGATAATGCAACCTTTCTCTTTCTCCACCTCACACTTCTCTCTTCCCACTCCTCCTCCCTTCTCTTTCTCCTCCTCCAACCACCACCACCACCACCA CCACCACCACTCTTTCATTTCTTTCTCCTTAAAACCACCACTTGATTCCAACAACTTCCGCCGCCCCACCAAACCCCTCAAAACCACCACCACCACCACT GCCGCGCCTTCTCCAAACCCTACTAACCCTAGTTCTAACTCTAACAACCCTCTCAAACAAAAAACCCCTTCCCCTAATCCCCTTACTGGCAAGCTTTGGC TTACTAGCAAACTCTCTCCTCCTCCTCCTCCTCCGGAACGGCAATTCGTAGACCAAGTCGACGCCCCGAAACCGGAGCGCGACGAAGAAGATGGAAAGCA AAACGATGTCGTTTCTGATGATGATAATGAGAACTTGACCATTTCTCGACAGACGGGGAAAATCTTTGTGGCGAACTTACCCTTATGGGTAAAGAAGCCG GAGGTTTTCGATTTTTTTCGCCAATTTGGGCCTATTAAGAACGTGATTTTGATTAAAGGACACAATGAGACCAAGAGGAATGCGGGGTTTGGGTTTGTCA TTTACGATGGTGATGAGACCGGGGCTGAGAATTCAGCCATGAAGGCGGTCGAGTTTGATGGGGTTGAGTTTCATGGGAGGGTTTTGACTGTGAAATTGGA TGATGGGAAGAGATTGAGGGATAAGGAGTTAGAGAGGGAGAGATGGGTGAAAGGGAATGGTGATAAGGGAGAGTATCGTTCTAAGTGGCATGAGGAGAGG GATGGGTCTAGGAAGGAGTTCCAAAAGGTTCTTGAGACCGAGCCCGAGAATTGGCAGGCTGTTGTAAGCGCTTTCGAGAGAATTAAGAAGCCTGCTAGAA AAGAATATGGCTTGATGGTTAAATATTATGCGAGACGAGGGGACATGCATCATGCACGTCAAGCATTTGAGAGTATGCGAGCTAGAGGAATAGAGCCATC TTCACATGTGTACAGTAGTCTTATTCATGCTTATGCAGTTGGTAGAGACATGGAAGAAGCATTACATTGTGTTAAAAAGATGAAGGAAGAGGGCATTGAA ATGACTATAGTGACATACAGTATAATTGTGGGAGGATTTGCTAGAATGGGCAATGCTGATGCTGCAGATCAATGGTTTAACGAGGCCAAAGAGAGGCTTA CTGATTTAAACGCAATCATTTATGGGAACATAATATATGCACACTGTCAAGCTTGCCATATGGATCGAGCCGAAGCCTTGGTGCGGGAGATGGAAGAACA AGGGATAGATGCTCCCATTGACATATATCATACCATGATGGATGGTTATACAATGATTGGCAAAGAAGATAAATGCTTGATTGTGTTTGACAGACTGAAG GAATGCGGTTTCTCTCCCTCGGTCATCAGCTATGGTTGTCTTATTAATCTTTACACCAAGATAGGAAAAGTTTCTAAAGCATTGGAGATTAGCAAAATAA TGAAAATGGCTGGCATAAAACATAACATGAAGACTTACTCTATGTTGATTCATGGATTCTTGAAGTTAAAAGATTGGGCTAATGCATTCTCCATTTTTGA AGATATTACTAAAGATGGTTTAAAGCCTGATGTAGTACTCTACAACAACATTGTAAGTGCTTTTTGTGGGATGGGTAATATGGATCGTGCCATTTGTATT GTCAAGAAAATGCAGAAGGAGAGGCATAGACCTACAACACGCACATTTTTGCCCATTATACATGGCTTTGCAAGGGCTGGGGAGATGAGGAAAGCCCTTG AGATCTTTGATATGATGAGGAGAAGTGGCTGTATTCCTACTGTGCACACATATAATGCTCTTCTTCTTGGTCTTGTTGAGAAGCGTCAGATGGAAAAGGC TGTAAGAATATTGGATGAAATGAATCTGGCTGGCATAAGCCCAAATGAACGTACATATACAAATCTTATGCATGGTTATGCTTCACTTGGCGATACTGAA AAAGCATTTCAGTACTTCACAATTATGAAGAACGTCGGCCTGGAGATTGATGTATATACTTATGAGGCATTGCTGAAGGCATGTTGCAAGTCAGGCAGAA TGCAGACTGCCCTAGCAGTCACAAAAGAAATGAGTACCCGAAAGATTCCCAGAAACACTTTCGTCTATAATATACTAATTGATGGGTGGGCTCGGAGAGG TGACGTTTGGGAGGCTGCAGACCTAATGCAACAAATGAGAAATGAAGAAGTTCAACCGGACATCCATACTTACACTTCTTTTATTAATGCTTGTAGTAAA GCTGGGGATATGCAGGTATGATATTTGTTAAGAAAATAATTTATTATCATTTCCTTGTTAAGTTGATGACTACTTGTGGTGGACTAAAAGTAAAGGTATT ATTGTGTCATTTCATTCATCCCCATCATCATTTAGCATACGAATGAATTGTGCGGGAAAACATTGCTTGTTATGCATCTCATTTCAGTTCTTTCTGCATA CTTTCATGAAAGGTCTTTGTGATTTGTGTTTGACATTTTTCATGATAATCATCCTGGGCTTGTTGTGTTAAACCTCCTCGAATCTTGGCGTTTGATTGGT AAATTTTAGATTCTTGTCAAATCACTGTAATTTATTGATATCATCACCTTTTAATCAGTTTTGTCTTTCCCTTTCCAGAAAGCAACAGAGATTATAAAAG AAATGGAAGCATCTGGTATAAAACCAAACCTCAAAACCTACACCACTCTTATACACGGTTGGGCGCGTGCTTCTTTACCAGAGAAGGCTCTAAGATGCTT TGAAGAGATGAAAGTGGCTGGATTGAAACCAGACAAAGCAGTATACCATTGTCTTATGACATCTTTGTTATCAAGAGCCACCTTTGCTCAATCATACATA TATAGTGGACTATTGTCTGTATGTAGAGAGATGATAGAATCCGAGATGACTGTTGACATGGGAACTGCAGTCCACTGGTCGAGATGCTTACTCAAGATCG AGAGGACGGGAGGAGAACTAACGGAAGCACTACAAAAGACATTTCCACCGGATTGGACATCACATCATGTTGATGTTAATTCTGGAAAAGAAACAGCTGA TCCGGAAATCGTTGTTGATGATGATGATGTATATTATGGCAATGGAATCAGTAATGATGAGGACAATGATGATGAAGATATTGATAATGATATGTAATAC AGGTCATGGTTTTGAGTTGTCATTGTAAATGTAAATGGGCAGAATGCCATGGTGGCATGCAAGTTTTTTCTGCCTTAAATTCTTCACCTATTAAAGATAC GAATAGACAAAAAATAGTGGTATCCTTTGACCAGACCCATGAGTTTTCAGGTGTTTGGAACATAGCTTCAAATTTCATCTTGTAATTCTCCTTGCATTTC ACAGCTTTTAACCAAGATGTGTTTGGTGAAATTGAAAATTTAGCACTAAGTTTTTATTTCATTAGAACGTTATTAATTTTAGCACCAAGACATATTTGAC TAGTTGTGAGAGCATCTTCAAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_51078; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_63609
| Blastp | Pentatricopeptide repeat-containing protein At5g04810, chloroplastic from Arabidopsis with 63.12% of identity |
|---|---|
| Blastx | Pentatricopeptide repeat-containing protein At5g04810, chloroplastic from Arabidopsis with 69.58% of identity |
| Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
| Kegg | Link to kegg annotations (AT5G04810) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461472.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |