| Id Trinity | FTRINITY_DN55442_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_111811 |
| Sequence | GAAACGGCATAAGATATTTTATTTTCCTTCTTCTATTAATAAAACAAATTGGCATTTCAAATTGGGTTTTTGCATTGTCCTTGAGAGCATTCTTGGTGTG TGCGGCGCGGCGCGATTTCGTTCGGTAGAAATTCAGCGGCGATGTCAGGGAAAGAAGAGAATCGAATATTCGTGGGAGGTTTATCTTCCGACGTTTCCGA GCGTCAGCTCCACCGTGCTTTCGATCGTTACGGCAAGATCCTTGAATGTCAGTTGGGTTTTTTTAAAAGATCTTCCAGAGTGATTTTGTCTTTGCTTGGC CGAAGCCCAATTTCAAATTTTCTGATATCAGGTGGCCTGTCTGTTGTTTGGCAGAGAATTCCTTATTTGTGATGTGTTACTTAAGTTCTTCTGTAAAAAC TTTATAATTGGGAATGGCTTTGTGGCAAGAAGATTGTGCTGACAATCAGACAAAGTTAATATTGTAAAATACCATTTGGAGTATAGGCTTGATTCTGTGG TTGATGAACAGAGATGTGTGATATGACATTTTTCAGTTAAGTTATAGTGTTATACAAATTACAAAGTTCTTCTGCATGAAGATTCGTTTTTTCATGTCCT AATGAAGAAACTTCGTCTTGTCAATCCATTGGCCTTGGTCTCCTTCATGTTGAAGTAGTCAAATCTATTATGTCTCAGTGGTAATTTCTAGTGGAGTATT CGAGTAACTTCTTGTGCTTGGCATTCCTGCTTTTCCTCTGGTTCTTGGTCACTTGTCTGATATGTGTTTGCTTCTGATTTGTTGTGCTTTTGAGGAAAAG GTAAAACATTCTTAAAGGCTGCTATCTTGGTGATGCATTATCAATTTATTTTGTCCCTCGATATGGTACTAAATGCTACTTCCGTTGCGGCTGATTTTTA GTTATAGAGGTAGCAATAACAGGCGTGCCGTCTTATGAACTTCCTTTCAAACAGTAAGTTGCCATTTCTAGTAGTGCCAGAATTTGGAAAGGTTCTATAG CATTGTCCATACTGCAGCATCTGAGAAAGGAATTAGTCTCACATGCATTTGATGGAATCAAGAATTCCGTGCTAATTAGTGTGACCACAGATGAAAGTCT GAGACCCTTGTTGTTCAAAGTGCCAAGTGGTTGCTGATGTTGTGTACATGAACTTTATTAGTATGATGTTCCTTTCAGATTTATTAAGGTGGTTTGTTCG GTCAGTTGATGAATTATAATATATTTGATTTTAGTTGAGCGATCCAATCTCAGATCATATGTGTCAATATAGGATATTTCCTCAGTGTAACCCAAAGCAC AATTAGGCAGACATTTTGTGTTTGTTGGATAGTTCTTCTAATTGATACTCATATCTGCATCATAACAGCCCCATGTGAACTGTGCTGGATTGCTCAGATT GTTCAAATATGAGTCGCGTGTGTCTTGTTTCTTCATGGCAAGGTGCTGAGTCTGACCAGATTGTATGCATACTATGACTTGAAATGTTGAAGGTTGGACA TCACCTTTGTTTTTAGGCATTACTTTAACTATTGGAATAGAGTTGATTGGTTTAACAGGTTCTCTGGTATTTTTACTGGTTTTTCATTGGTCAGTGTACT TCTAGACAAAGTTATCCATCTCCTTCCTGTCATAATGCTATGTGACAGAAAATTGGATTTTAAAACTGGATTAATATGGCAACTCCAGAAGTGAAAGCGA AACTTGGACTATCTTGAAAGTATTACATTTCTGGGTATATTTGTAAATTTAGTTATTCTGAGTATGAAAGTTGTAGTACCCGATCTACTGAAAACAAGGT TGTTCAATGAGTGATGAACCAGTATGGAAGATGCTGAAGTTCTAGCCTACATTGTGTTAGTAGTTACATGAAAATAGTAAATAGAACATGGGCTTCGAAA GCATTATAAGCACCATAGTGAGTTTTAGGGTGGTCAAACTTAAAACAAATATTAAAGCTTAAGGGTTGATATTTGACTGTGATGATTCTGAAGATAGAAG AATTGGGTCTGTTCAGTAATTAGATAGAAAAGGGAACTTGAGTGACTAGAGAAGAACTAGAAAACGATGGACTGATTGAAGACCAAATAAAAGGGAGTGT TCCATAAACGGACACTAAAACCAAGCTATACCTGTTCACTAAAATAGCACGGAATACAGAGAGTGAAGGAGCAAGGACAACAGAGCACAAGGAGCAAGGA CTACAGAGTGAAAGAGAAAGGCTGAAACTGGTTGATGATCTGACGAAGGGAAGGAACAAGGCTAACAGAGCATAGCTGAGGAAGGGTTGACAGCCAACAG AGCACAACAAAGCAAGGTTGAACTGCTGAAGCTCTAGAGTTAGTTTTGACAGTGCCAGTTGCATATAATGCTATCTGCTATGCTGATTAAAGCAATTTAA AAGAGATATCTGATACCTAAAGTTGGTTTGCTGGTAACAATGGACATAAAAGTACCCACTGGTGCAGCCCCTTGGATGATGCTGGGTTTTAGTGAGGTTG TAGTATGGAATTTGTCTCCCTGTAGAATAGTGGTCACTATGGCCAGTTACATATCTGACATGTATGGGCTTTGGATTCTTCTGACCTGGCCAAGCTATAT ATGAAAAACATTGTGCAGCTTTAGAATAGTAGCACAGAAAGTAAGTTGTCTGGTTATAAACTACAGTTTTCGTTCAATGTTGTTTGCATGTGTTAAATGT GTTGCCTATTGTTAAGTTGATGAGATATATTTTTTTAATAAAATACTGAAAGTATTGATGCAGAGAAATGAAATGTATATATTTGCCCAAAAAATAGTTA TGCAAGAGAAACTAAAATAATTAAAGAACCTACTGCTATCTGATTTTCTCCGGGTATGTATAATGCCTGACTTAGTGTCAAGAGGATGAGCCTTGGTGCA ACGGTAATGTTGCTGCTTAGTGGCCAAGAGGTCATGGGTTCAAATCCTGATAACAATCTCTCTGCTTGCGACGGTAAGGTTGCACACTCCCCAGACCCCC ACTAAGTAGGAGCCTCATGCAATGGGCTGCCCTTTTATGTATAATGCCTTACTTCATTTTAAACTTAATGTCAGCTTGGAATATTTTAGAAGTGCCTTTC TTTGAATTCATTATGTGGCAATTACACGAGTTCTTTCATGTTCTTGTACTTGGGTACTTATTCCTCCACTGATTAAACTTGTTCTATAAGTTGTGCTCAA CCATTATCTTGAATTCTTCCAATAGTTTCTGTTGGTCACATGCATCAATAGCATCGGTGTGTATACCATAAAAAGTGCTGTTAAATTAATGCTAAAAACC TTCCTTTTTAGCAATTATTGTTATTGCTTGGTATGAGATTCTTTAGTGGTTCTCCTGTAGATAATGGTTGAAAGAGATACAGGCCGTCCACGTGGATTTG GGTTTATTACATTTGCTGACCGTAGGGGAATGGAGGATGCAATGAAGGAAATGCATGGACGGGAGCTCGGTGATCGTGCCATCTCTGTCAATAAGGCCCA GCCAAAAATGGGATCTGATGATGCTGACCATGGTTACAGAAGTAGCTATTCATCTGGTGGCAGGGGAAGCTATAGGGTGGGAGACAGGACAGGACAGGAT GACTGCTTCAAATGTGGGCGTCCCGGGCACTGGGCTCGAGACTGCCCTATGTCAGGTGGTGGCCGGGGTGGTGGCGGCTTATTTTCTTCACGTCCTAGGT TTGGAGCTTCCGGTGGCCTTGGGGATCACCTAAGCAATGAACGTGATCGCTATGCTGATGATCGTTATGATGGAAGACGTTACGGAGATGGGGATCGTTA TGATGATCGTTATGGCAGCCATGACCGCCATACCAGTGACAGGTATCCAACAAATGGAGATCGTTTTGGAAGTGGTAGAAATGGCGGTTCTGATCGTTAC CCGCAAAATGGTCAAGGCAAAGATAGAAGCTACGACCGGCTAGGTGGTCCACGTGGAGGTGCTGCCGATAGATATGGCGGTGGAATGCCAGCAAGAGATG AAAGAAGGACCTACAGGAGCAGCAGGCCAGGTCCATATGACCGCCCCAGTCGGGGTGCTCGCCCATCTTCATTTGATCGGTACTGATTTGTTCCCTTTAT TGAATTTTATGGGATATCCAGATGCAGAAGGCCCACTATGGACCTAAATTCCTTTTTGGATGATATATGGACCTAGTTTTCTCTACGTAGGGCATGGAAG TTTCATTGAACAAGTAGATATTAGTTTCATAGATTATGGATTGGTTTGTTTATGTCTTTAATCTGAGCTTGCAAATCTCTGTTGAGTTAATTTCTATTTG GATTGATGGAGAGAATTTATTAATGTTATTGATGTTCCTCTGGGTAGCTTAAATTACCTCCCTAATATGCAGTGCAAAAAGTTAATTGCTTTTTTAAAAA TAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_51450; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_111811
| Blastp | Glycine-rich RNA-binding protein RZ1C from Arabidopsis with 49.82% of identity |
|---|---|
| Blastx | Glycine-rich RNA-binding protein RZ1C from Arabidopsis with 43.96% of identity |
| Eggnog | Rna-binding protein(COG0724) |
| Kegg | Link to kegg annotations (AT5G04280) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461493.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |