| Id Trinity | FTRINITY_DN55489_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_111050 |
| Sequence | ATTCAGAGCTTGAATATTTGTGATAATTTGGCTGATCACATGGTATAATATGCTTTCTTATACCTTGTTTGTTTTTTTGGGTACTACTAAGCGTATCGTG TCACATTATGGATGAAAAACTAATCTTGGGGTTGTGTGACTGTCCTGCCAACAATTGTCGCACACAGGAATCAAACCTTTTACTTTCTGGGATCTAGCAG GCTTTATACCACTTGACCAACGCCCTGTGGGCTTGTTTGTTTATAATTAGGGGAAAAATCATTAATTTATTGATTTTATTTTTAATGACTTTTAGTAAAA TTTTGTTGTTTGTTTAGGTTGGCAATGTGTATGTTCAGTTTAAAGAGGAAGACCATGCTGCAAATGCGTTAATGAATCTGACTGGAAGGTTTTATTCAGG TGCTGCATACTCTTTCTCCTCTTTTTGCGCCCCTTGGTTTTAATAAAAATGCAAGGGGTTGCTCGTATTATCGGAATTGTTTTATTTGTATTTATGATTT ATGATGAGGTTATTTTTTGGTGTCTCTGGCGAAAAATTATGGGAGGAGTTTTATATGATGAATTGTATGCATATGAAATGCTAAACTGGGTGAAAGTTGA AAGTTATTTTTGACATGGTTGTTGAGGAATCAAATAATCAATTCAATTAACACCTGTGTTGTTGTTTCAACCTTTTAGGTTATTTTACGTCTAAATTATT TTTCAATTCATCTTTAAGGAACACTTATCTTTTTGTTCTGTTCATGACATCATGCATTGCTTTAATAACTATGGAAGTTAGTAGTTATCTAAACTAATTG CTGGGATGTGCTGTTGTATTACAAATAATTGCAACATCATCATTCGATATGCATTTCTTTATCTCCCGCTTAAGAAAAGTTGGTATTTAAGTTGGTTTCA TACCAATAGATTGGAGATACATGGTTTTCTGTGAACTCTTAATGTTTACCGTGATTTTTTGCCACTTTTACTTGGCCTTTCTTCACTCTTGTTTGAATCG TTATCTTTCTACTGTCTAATCTTGTCTTTAATTGTTATACATCAAGTTTTGTGCTTAGTTAGGATATGATTGGGCTGATGTGATCCCTGATATTCATTTC CTCTGGGAATAAGTTTATTTATTTTTTGTTTCTATTACACCTATTGACAATTGAAATAACAAAATTGATTAGAACTCTTTGGTGACACAAACATTATACA TGAAATTTGTTTCGAAAATATCATGAAGCTCATCCATCAATTTTTTTATTTTTATTATTGGGAATTGGTTTCTATTGTTCAAGTTGTTGTGTATACTCAG TACCTTATCAAATGGTGACAATTGTTACAACGACAACAACCAAGCCTTAATTCCATTAGTGGGAACGGCTACGTGGATTAAACGACGCCATAATGTTGTA TCTCATAAATCATGTTTATTGTGATAAAAACTTATAACTCAATGATTACTCTAGGTCGGCCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGA AGCTACTTGTAGACAGTATGAGGAAAATGTCTGTAATCGTGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATCAGCAGGGATTTGAGAAAGCGGTTA TTTGGAAGAAGTAGGCGCTTTCATGGCCGAAGTGGAAGCAGAAGTCAAAGCCCTCCAAGGAATCGTAAGCATGAGGAGCGTTCACATTCTGGTCGTAGTT CTGATAGAAGAGATTATGACAGACATCATGGCCACCATGGTGGTAGGGACCGGTTGCCCAGAAGCCGTAGTCCTCAACGAAGAGCAAGACGAAGTAGAAG TCCAGCAGGAAGGGATAGGTCAGCCAGAGAAAGTAGTGAAGAAAGGAGAGCCAGAATAGAGCAATGGAACAGGGAGAAGGAACTGGCAGATTCTGGTAAC AAGAACAATACCAATGGCAATGATCATGAAGAACATGATGAACAAAATGGAAGTGAATCTGGTAGACACCAGAACGACCAGATATAGTTGCTGCACTGTC ACTTGTGACCCAAAAAGAAGAAGGACCGTGTAGTTTGGCAAGTGAGTTGGTTTGTCTAGATTGCACCTACTAAGTTGGTTTTTAGTTGCTAGCATCTTAT TGTCTTAATCTGAACTTCTGTTGCTTAGTTATAGAACATTGTAGTATCTAGACCAAGAGCAGTTTAATTTTGCCGCATCAAAGTGTTATACTCCTGCACC ATGGAGGGAGGGATAGAGTGGAAAAATCGAGGTAATGTTTGAAAAAGATTTAATCTTTTTGAGGGGTCAGTGATGAAGTTGTAGAAAGATCGGTTTTGGT TTGGGCGTTTCACACCTTAGAATCAAGTAGACGGGATTTGATGGAAACGGGTGGAAATGGTGCATGTATCTAGATTTTAGACTGCATATATTTCAGCTGG AGAATTTTATGATACCTTTTTATTTGGAACTTCTACAAATTTGGTTTTATTGATAACAGGTTTAGTTATTCAATGAATTTTTATGCAAAATTCAGTGTTT CAATACACTGACATTGCATCAAATATCTGTGCTATTAGGTCAATTGCTTTTTGATCTTTATTTATTGGCTTGAGTTTTGGATGAATCATCCAACTAAATA TGCATTTTGAGACCTCAAATTTGGCATGCTGTAGCTTTCAAAGTAATGTTAATAGCCTAGAATCACATGGGTAGACTTATAGTCAGTTTGTAAGTTGGTT TTGGAGAGGAAGTAAAAGAAGGG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_51850; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_111050
| Blastp | Splicing factor U2af small subunit B from Arabidopsis with 55.03% of identity |
|---|---|
| Blastx | Splicing factor U2af small subunit A from Oryza sativa with 88% of identity |
| Eggnog | auxiliary factor(ENOG410Z5PX) |
| Kegg | Link to kegg annotations (AT5G42820) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453322.1) |
| Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) (PF00642.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |