| Id Trinity | FTRINITY_DN55507_c2_g6_i18 |
|---|---|
| Name Transcript | Ll_transcript_75829 |
| Sequence | GACTGAACTCCACCGCACACAAATCAGATAGAAAACGGAAAACCCTATCAACCTATCTCACCCACCACTCTTCTTCTTCTTCTTCTCTCAATTCAATTCC TTCTCTTTCTATATATATATATATATATATATATATATATACCTCTCTTCGTGCATGTCCTTCATTTTCTCTTCTTCAAGGAAGAATAGCACATGGTTTA TTGCCAAAGCACCTACTGCTTCATCTCTCAGTAGAGGATTTGTGGTAGCTCTTCTGATAAGAATGCTACTAAACCGGTTTTTGGAGTCCAGAACTATCCC AATTCCCAACTCATGGAGAAAGTTTGAAGAATCTATGCTTACATTACGAATTGAAGTTTGTGAAGAAGTGCAAAGTTTCCTTTGAGTTGTAATTTCGTTG TTACTGAATCGTCTAAGTAATAAAGTTTTGGCACCAAATCCCTAGTAATTACAAGCCACATCATTTTTCGAATGTCCGAAGCTGCTATGGCAGTTGTGAA ACCTGAGGGTGATCCAGCTGCTGGAGCATGATGACGTGGCACAAAGAAGGGGAGAGGTAGAGTATACTGACCATAACCTGGAGGAGCACCATAGAGATTG GAGGAGTTTATTCATGTCCTGTCTATGCAACCCTACCATCATGTGAGCAACCACGAAAGTCACCATATGAAATCCTACATCTGGCTTAAAACTGCGGATG GTGCTATTCAACAAGTTGACGAAGACGTTGCCATGTTTTGCCCCATGATTTGCCGAGAAGTACTTCAGACAGGCATGGGAGCTTCCAAACTGCATGCTAT ATCTCTTCCACAACGGGTCAACCCTGCCATATTGGGTTTAATACTTGATTACTGCCGGTTCCACCAAGTACCAGGCCGCTCTAATAAGGAGCACAAAACT TTTGATGAGAAGTTTATTCGGATGGATACAAAGAAGTTATGTGAATTGACATCAGCTGCTGACAGCCTCCAGTTGAAGCCTTTGGTTGATCTAACCAGCC GAGCACTAGCTCGGATTATTGAAGGAAAAACTGCTGAGCAGATTCGTGAAACATTTCATTTGCCTGATGATCTCACTGAGGAGGAAAAGCTGGAGCCTCT TAGAAACATAACTGATGATCCACGTATTCGACTTCTAAACAGATTATATGCTAAAAAGAGGGAAGAATTAAAAGAGAGGAAGAAGCTGAAGAATGTGGAG GTCGAGGAGGATGAGCCTAAGGATGAGCGCTCAGTTGATGATCTTCTTTTATTCATCAATGGTGCAAATGGTGATATGAAGGGAACTAGAGTGAATAAGA ATAAAAAGAAGAACAGGAGAAGGAAAGACCATGCCAAGGATCCTTCTTTACAAAACTCAAATGAAAACGACAGCAAGGAGTTGAGTCCTCTTCCTTCTGC ATGTCACCATGACAATTTTGACAGTTCCTTTGTGGCCTCTCCAAGTAAAAACTCAAGGACGCAAGATCTTCCTGCTGTTAATTTTTCTCCAAAGCTTGAG TTCATTGATGGTGATCTTGATGATGATTTAGATCCTGCAATGAAGGAGGAGCTTGACAGGGAAGTAGAAGATTTTGCACGAAGACTAAATTCAGATTGGG AAGCAAGGATGCAAGAAATTTTATGTGAAGGCCAAGACAGAAGACTAGTACCAATTTCTACGAGTACCAATGGTTCCACACACTTGCATACAGGTCTTCA TCGAAGATAGTGCATCACTGGAAGATAATTTATTTTAAAGGTGACTGGAAGTTGAAGTAATCTAGAAGGATGACAGCTTAGGGTTTGCTGTTGTCTGAAT CATGGAAGCCCAAGTCGTTGTTTGAACACCATGTGAGTAATATTTGTTTGTCCCTTTTAACTTTGATACAAAAATGTACCTTTGTCTTTTACCTTTGAAC ATTTTGAATTTTGAGGACCAGGGAAGAGGAGCAAATATAAGGGAAAAGGTAGAAAGTGAGATACGAAAAAAAAATAGGAAATGAACAAACTCTTGGAAAG CCATTTGAGCAAAATCCGCTCATTGGCCTTGACCTTGTTTTCTTGTATTTATCTGGGTCTCAATAACTGTGGCCAGACCTCCTAAAAAATTAAATTAGTT ACATTGTCATTTTTGCATTGTTTTGGCTTTTTTAGGTGGTTGAGTTATGGTTGAATTGTATTATATCTTTCAGAAACTATTTGCCGTTTTTAGCTTATTA AATATGATTATAGTTTAATTGCATGATTTCTTTAGTGGTCTAATTGATTGGTAGAGTGATGTACTGTTTTATGTTTGGATTGGTCCCAATATAGGGGGTT AGTTACTTATTCCTTCTTGCCCAAGTTCATTTTCTCTCTTAACTTCATATCATTGCATTTCTCCCTTGTTTCATACCGTAGTTGGCCAGCAAGGAAAGAA TAGAAATTTTATGTTGCAGATAAGGACTTGACTCCAGTGCATTTGCAACTTTGTGATGCATTTATAGAATAATGATTTGTGACTAGTTACTTCAACAAAG GATAACTTTTATTGATCCGAATATAGAGTCCAAATTCTTCAAGCTGTACTGACCAAATTCTAGAAATTGGTTTGGATAATAATAATTTGAAAGCTATTTA TTAGTCTTGTCGTTTCTTGGCTGTAAAATCTTATATTCTTGTCCATTTATCTGCTCTTTCCTTTCACTCTGCCGTGTTTATGTTTTAACGTGGGGAAATA CATGTTTTATAGTAAATGTTCATTATGTTACCTTAAAACTGCTATCTATGTCTGGTACTTTAATACGTGTTTTTTTAATATCACCCCAATTTCCATTTGA CATCATGCCATTCAACTCGAAATGTAAAAAGCTCAAAAACGTGTAGTCACAGTGCAGAATAAACATCATCTGAAACACATTCCGGAAATAGTATTAAAAG GTGCCCCCCTACCCTTCGGTTTAAGGGCTATGAACTTATGATAAGCATTAAATGATATCTAATCAATATTAATTAACTGTGGTTACAAATATTCCTTTTT ATTTTCTGTCAAATGTTTCAAATTCACTGTAAATTCGAGGCTTCGAGCTGTTCCATCTGGTTTATTCTGCAATTCCGTAACAACTAATATATTGCTTGAT GAGAATTTTCTGAACATGTTTAGATATGCATAGCAAGCAAACTGTATTCATTAATTACCATGCCACTGATAGTAATAGAAAAAACAGGATTTATTATTTT CATTGTATTGAATTATTGATTAATAATATTTTAATTTGAACTAGTCCAATTGCCCTGCACATGGAAATTATGTAATATATCCTATTGCAAGTTGTCTAAG CAGAAAAAGGAAGAAAATGTGTTGTAGTTTGATATGTATCTCAATTTAATGCCCCACAGTGGAAGTATTTTATGGA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_52039; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_75829
| Blastp | SKP1-like protein 21 from Arabidopsis with 64.24% of identity |
|---|---|
| Blastx | SKP1-like protein 21 from Arabidopsis with 60.76% of identity |
| Eggnog | ubiquitin-dependent protein catabolic process(COG5201) |
| Kegg | Link to kegg annotations (AT3G61415) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453187.1) |
| Pfam | Skp1 family, tetramerisation domain (PF03931.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |