| Id Trinity | FTRINITY_DN55518_c4_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_74530 |
| Sequence | GCCAACACCAACCACTGCCCAATGGCCCCACTCTTCACCACTCCTACTCTTCTTCACTTCACTCTACCCTTTGATATTTCGTGTAAATGTCACTTTAAAT AAAATAAGACCACACACAAACAAACCTTATAATAATAGAAACTGACCAAATCAATCTTCTTCTCTACACTTTCTTAATCGAACCTTCTCTTCGTTTCTCA CACCACAACAAGTGAATTAACTGTTAGGAGATGTAGCTTGTGGGGTTTAAGCTATAAGCGGTATTAATTGGACTTCTGCTGAAATGGGTTTGGTTTTGTT ATTGGGCTGATTGACACATGGCACATAAAGCAATGACATCTTCTCATGGTAACGCACACTCGGAAGGTGCGGAGATGGAACAGATAATCACTGAATTTTT CGCTAAAAGTATTCACATAATACTCGAATCCAGAGCACTCTATGCGTCCTCACGTAATTCCTTTGGCGATCAAGTTGTGTCATCTCCATCTTCGTCGTCT TCATCCTCATCCAGCGTGCGCCCGAGGGATAAGTGGTTCAATTTGGCACTCCGGGAATGCCCTGCAGCATTGGAGAACATGGACCTGTGGCGCCAAAGTA ATCTTGAGCCGATTGTGATTGATGTGGTTTTGGTGCAGAGGCCTGTGAACTGGGACCCTACGAGTTGCCCCCTGAAAAAGGTTCTTCCTAGGAGTTCTTC AATGAAGGAAAGATACCCATTTTCCTGGAATAGTGATCAAGAAGAATTGGGAATTGAAACAAAGAGTGATAAGATTATAGAGAGATGGGTGTTGCAGTAT GAGAGTGGAAAAACAAGAGATTCTAATTCCAACAGTAGGAGGTCAAGCAACATTTCTTTGCATACTTTGTATAAGAAATCAACTTTACTTTTGAGGTCTT TGTATTCCACTGTTAGACTTTTACCTGCCCATAAAACTTTCAGAGAGCTTAATTCATCTGCGCAGATTCATCCATTCACCCTTGTGCACCGCATATCTTC TTTCATTGAGCCCTTCACCCGTAGAGAAGAGGCAGAAATGCTGAAATTTGGGTTCACCCCTGTGGATACTGCGTCCGGTAGGCTCTGCCTTTCAGTGATG TATTTACCATCAGCCTCAGAAGTGAGCTCTGAACCGACAACTCCTATGTCCCCACAAGTTATAACTGACTATGTCGGGAGTCCTTTGGCTGATCCTTTGA GGAGATATCCATTGATTCCGGTGACAGGATTACCATCATATGGGTCTCCATCGTCATTGCCCTTTTCAAGGCGACATAGTTGGAGTTATGACCATTTTAG AGCTTCTTCTCCTTCCATTGCTTGTTCGCCTTCACCTACATATTCAGAATCACACACATCAGTGTCTATTGCAAATTATCGGCATTTTCCACCTGCAAGT TTGCCTCCTCAACCAACTGAGTTATCATTGATTCAGAAGAGGAATACAGGTTTTGATGATCGTTATCCCCATCCATCACACTCAATAGACAATTTTGGGT CATTACCAACTAAAACAATTTTACGAACTGAAAGTGCTCCAGTCAGGATACCTGCTTCTGAAGTTACTAATTCCCCTGATACAAATATGAGCATGCAAAC AGGTGCAACAGCTGAGAAGTTGTTTTCTCTTGGAAAAGATGAGCCGCGAAAATATTCTGGAGTGAAGATATCAGCTAACAGCTCGCCGCATATTTCATTT TCCAGAAGCTCCAGTAGATCTTATCAGGATGATTTTGATGATTCTGATTTTACTTGTCCTTTTAATGAAGATGATTTGACAGATCCAGAAACAAGAGCGG AATCTTTTGATCATGGACATATGGCTGATGCGCTCGAAGCCGGAGGATTCTTTCCTATCAGAAAGTCCCATGATGCTGCTGTTGGTACGCTTGTACATTT GCTGAAGAAAGCACCACCTCTCCGTCAAGATCTCTCCACTTCCGAGCACTTGTCACAAGGCGCACACTCTGAAATCTGGAACAACAACATTAAAGAGCCC AACCAGACCCCAGATGCTCCAATGCCAGTGAGCATGATGTCTTCAGGTCTCATAGCCACTAGGAAAACAACAGCTGATGCATTGGAAGAGTTCCATAGTT ACAGAGAGATGAAAAACTTATTGCTTACTGGAGGTAGGAAGAACCAGATATAATATACTTTTGCTTCTGTGAATGAGGTTCATGTTGATGTTAAATCAGC AAAATGCATGTACAGCTTTTTTACTTGATAACTCTTTCTTTGTATTGAAAATATGTGTAAATATGATGATCAAGCAAACCTTAGTCCGACTAGTCCGACT AGGTGGGGTCAACTGCATAAATTGAGCCGATATGAGCTTTTGGCACACTACAACTTTATGTTTGTAAAATACATGAAGCTGGTGATCAAATCTGAGCCAT TTGGCACACTACAATCTTATATTGTGTAAAATACATGAAACTGTATAATAACGACCACCCTTTCTCTTTAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_52137; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_74530
| Blastp | Autophagy-related protein 13b from Arabidopsis with 52.65% of identity |
|---|---|
| Blastx | Autophagy-related protein 13b from Arabidopsis with 51.04% of identity |
| Eggnog | Activates the ATG1 kinase in a nutritional condition dependent manner through the TOR pathway, leading to autophagy. Also invoved in cytoplasm to vacuole transport (Cvt) and more specifically in Cvt vesicle formation. Seems to play a role in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage during stationary phase (By similarity)(ENOG410Y4BP) |
| Kegg | Link to kegg annotations (AT3G18770) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462868.1) |
| Pfam | Autophagy-related protein 13 (PF10033.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |