| Id Trinity | FTRINITY_DN55537_c3_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_75640 |
| Sequence | GCTCAAGCACCACCCCTTATCTCATGGCCCCACAATCTTTTTTCATTTCTACCAATATCATCGCACCATAAAGCCTCACCCTTTTCATCCCCATTTCCTC ACACACCATCGTTACTCCTCTGAATATAAATCCATCAAACGAATAAACGCTATGGACAAATAACACAAAATCTTCATCTTCTATTAACATCTTTCTTCAA TTCAATGGCTCTTATATCTCTCTCACTTCTTCCCTCTCTTCTTCCACACTCTTCTTCTTCTTCTTCTTCTTCATGTGCTGGTGTGCTTCATTTCCGTTCC TACAACAACAACAATAACAACAACTTCGTTTCGATTAATTCTTCTTCTTCTTTTACTTCTTCAAGTTCTAATATCGCTCGGAGTCGAAGTCGCCGCCGAT TTCAGACGCTAGTTGTAGCGGCTTCCGGCGATTACTATGCTACTCTTGGAGTCTCTAAATCTGCTACTGTTAAGGAGATTAAATCTGCTTATCGAAAGCT AGCTCGTCAGTACCATCCTGATGTGAACAAGGAACCTGGAGCTACTGACAAATTCAAAGAGATTAGTGCTGCATATGAGGTGCTATCAGATGATAAAAAG AGGGCTTTGTATGATCAATACGGTGAGGCTGGAGTCAAGAGCACAGTGGGAGGAGCATCAAGTGCCTATACGGTATTCAATGTGTCTTCTAATTTGTTTT TCATGTTTGAGTTTATGGAATAACACATAATTGAAAGGATGATAAAAACTTGATGCTAGGAGAATTACTGATAATATTACCAACTGCTCCAATACATATA TGTTGCCTTCTTTTTGGACACAAATTGAAATGCATGCCAATTTGAGTTGACTTGATCTATTCTTCTATTTCTGCTTCTATAAGGTTCATTTATATTGAAC AAATTTTTTTGCAGACTAATCCATTTGATTTATTTGAGACTTTTTTTGGGCCAAATATGGGTGGATTTGCTGGCATGGATTCAACTGGATTTGGAACACA GCGTCGTAGTACCGTTACTAAGGGTGAAGACATCCGGTATGATTTCTCGTTGGATTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTCGAGCTTTCC CATTTAGAAATATGTGAAGTCTGTACGGGTACAGGAGCAAAGATAGGCTCCAAGAAGAGAATATGTTCTACTTGTGGTGGGAGGGGTCAGGTGATGAGGA CTGAGCAAACACCTTTTGGGTTGTTTTCACAGGTTTCAGTATGTCCAAACTGTGGAGGGAATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAGCGG TGAAGGTCGTTTACGGGTCAAGAAAAATATTAAAGTTAAAGTTCCTCCCGGGGTTAGCTCAGGCAGTATTCTAAGAGTTGCTAGGGAGGGTGATGCTGGA CCAAGCGGGGGCCCGCCTGGAGATCTTTATGTATATCTCAACGTGGAAGAGATACCAGGAATTCAAAGAGATGACATAAATCTCCGCTCAACAATATCCA TCAGTTATCTAGATGCCATAATCGGGGCTATTGTGAAGGTAAATTATTTTAGTCAGTATTCATGCATATAAGCTGAATTGCATCTTTGCTCTTTTTTAAT TTCTTTAATGTTATCCATGTATGGAGGTTGAACTTAGCACGGTTTTCCCTAGTATTCTATTGAGGCCTGTGGGCCTTAAGTAATTTTTTTTATGCAATAA TGGTATTATGTCTGACCGTATAATGGTAATGAAATGATAATTATAATCATGCCTTCCTTGAGATGGAAAGTTGGAAACTATGGCATGATAGAGTAATTTG AAGGAGTGAGTGCAACTTTCTTTTCTCGGCCCTTGAGTGTGACTAAGACAACACTTTATTTCCCATGTGCAAGTATGTTTTTTGTATTGCTAGTATCACA TGACTACGGAACAGTCAAAACTGATGTCTGGAGCATTTTTCTCCAACATATTTGTGTAATGAGTTTGTATGACTGAATGTAGTCTGGACATTTTTTTCAA TAGATCAATTAAATTTACCTCTTGTTTGTTTCTTTTGTTGAATGTAAGATTTGATACTTGCAGGATATTTAATTCCTTTTCTCATTGTTTTTTCCTTGAG TGTCAATGCTAATGGCGTTGTTAACTTGTTATCCCATGTCATTGCGGTCAATTGATCGAAATATTGTCACCTAAACAGGTTAAGACAGTTGAAGGCACTT CTGAACTACAAATACCTTCGGGCACCCAACCTGGAGATGTCCTTGTCCTTGCAAGGAAAGGTGTACCGAAATTAAACAGACCATCAATACGCGGTGACCA CTTATTTACAGTTAAAGTTACTATACCGAAACGGATTAGGTAATGGGTCAATTTTAAAGAGTTGTCTTTAGTTTGTCTCTCTGTTACACCCTCATGCTAT GTATTGATTTCTGTCCATATCGGTAGTTTGACATGAATTGCCTCTTCTATGCATTTTCAGCACAAAGGAACGTGAGTTGCTTGAAGAACTTGCTTCTCTA GGCACAACAAGTAGCCGTTCAGTATCTCGCCCTAAAACTAACTCTTCCAGTAGGTGTCTCCTTAATGATTTGTGTCCGTTATTTTTTTATTTTTTAATTC ATTAACCGATGGCCACAGTTAGTCATTTGACACTTAAATACGTCATGTTCATAAGGCACTGGTTAGGTCTTCTCAACACATTTGAACGTTGCAACTTGCC ATATAGAAAATGTAAAATCTTACAAGACAATTGGTAGGCTCTAGATATGTTATTTGTGAACCATGTTGACTTTTTACCTTCTGCATCAGGAAGTAGTGAA GGCCCTTTAGCTCAAAAGGCTGAAAGTCCAACTGAAACAGTTTCAGAAGAAGTTGAACAAAAAGAGGACCAAAATGATATATGGAAGGCATTAAAGGACT TAGCTGGGTAATTATTTTATTTGCTTTTTATTTTTTCTCATCAAATTGTTGACTGTGCCTTCAGTTTTCTCAAGCTGAAAACATCAATTGCTAATTATGT AGAGCAACATTTTATAAAAATTCTAAGTAAATCATTTTAGTTTTTAGTAGCATGGAATTAAATAATCCATATTATACCAGAAGCTCTTAAAAGGACTCAT GAATCTACCCTTAAGTAATTTTGAGCGTAGATTATGTTCTTTATCAATTTCTCTATGTACTCTAATGCTATTTTTCCAAATGAGAACTGATTCATAGCAC AAGTCTATTGCACATTGAGTTGATACATCAGAACTGGCATTGTGGGTAATGTTGGTGCATCATATTATCGTGTGAATCCTTACAATTTGTCTGGAAAAGA ACTGCTGAACTGGGCTGATTTATTTGTGCAAATTGGTTGACTGTTTTAGATGTGCCATTCATTTACTGATATTTTATGAGATGCTAAGTTACTATTTTGT TTCTTATAAATTTACCAGTCCTACTGATAGGATGAAAGTTTTCTCAGTTCATCATTCTTAATTGATTTAAATTCGAATCAGAAACTCAAACCATGTGTGG ATTGATGTTTTTTGTTGAAAATTATGACAATCCAATTTTGGGTTGTTGTGTTATAACTTATTAGAGACAAGCTGATCACTGGATAAGAATAATTCTTTTG TTGTTGAGTGTGGTTGTTAATTTTGATGACTTTTCATTGTACACATGCTGATCTGACAAAATCTTTGCTGCTATTGAAACTTACAGGTCCGTAGCAAATG GAGCTGTAAAGTGGCTGAAAGATAATCTCTAGTCGCATTGATTTATTAGATGGTCCAGAGTCTTCAGGATGCAGCTTATCTAATTGTGGCTCAAGTTTTA ATGATTCCAACAGCATCTTCAACTATGCAGGCATTTTTGTTGGGTGCTTTAACTGAAAATTGTTCTCCACACAGAAATGGGTCATGCATATTCTTTTATT TGTAAATTTTGGCACAAAGACCATGTATACAGAACCACTCGTTCACGGATCTTCAAATTGTACTACATGAGCATGTTGCGGTAGAAAAAGGCGGTGTATG CCTGACTTGAAGTTTAAGGTCTATTTGAGTCCTATAGTTAGTTTTCATCAAGTGAATCCTAATGTTGAATTAGGGGGAATTTTAGCTTTATAAAAGCTGT TTCCAATTAGGACCTTGTAAGCGTATTTCTTTCATTTTTTGTTGGTAAAACCATGACATTTTGTAGTATCCTTTTGGTGTAAGACTAATTTTTGTTTGCA TGCTGATCCCAGGTATAAGATGTTTCTAGTGTATTGTAAAAGGATCAAGGTCCTCCCTCACCTGTTGGTAGAAAGCAATATCAAATATGATCAAACTTAT TTATGTTGTTATGTTTATTTAAGTTAAACATATAAATAAAGGGTGAAGCTTTGCTGAATCAACAATGGTTTATTCATTTTCAACAACAGGAGAGGATTCT GATCCATTGTAAAACTCACTGACCTTATAGTTCAGTTCAATGACAAACCACG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_52291; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_75640
| Blastp | Chaperone protein dnaJ A6, chloroplastic from Arabidopsis with 57.02% of identity |
|---|---|
| Blastx | Chaperone protein DnaJ from Cyanothece with 55.34% of identity |
| Eggnog | ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity)(COG0484) |
| Kegg | Link to kegg annotations (AT2G22360) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448084.1) |
| Pfam | DnaJ domain (PF00226.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |