| Id Trinity | FTRINITY_DN55543_c1_g1_i22 |
|---|---|
| Name Transcript | Ll_transcript_75115 |
| Sequence | ATTATTTGATGACACTTGAAACATGATTTGGTCATGTGGTCACGAAATAGATAAGGTACCAAGAGAAGAAGAAAGGTAGAAAGGTCACTAACATCACACG TTGCATGACGACTTAAGCAATTTAATTTACAAATAAAATCTCTCTCCGCCACTCAAAACTGATTACAGATTATAATCACTTAAATTTTGAAGCAGCTTCA TGGCTTTTGAAACTGCTTACTCTTCTCTATCACTTCCAAATTCAACTACCTTCTTACACTCTTCTTCTTCTTCCAATATCCGAAGACTCAAATCTACTTC GCTTCCTTCTAGATTCTTCTTCAACTTCCAATCGCAACGCATCGTTTTGACGCCGAAAAAGCTTGTGGTGATGAAACCTTGCGCGGTGAGGATTGAAGAG AAGAATAGTAACGTTGCTGGAAGTGAAGGAGGAGAATGGGAGAAGGTTTCTGCGGTGTTGTTTGACATGGACGGTGTGCTTTGTAATAGTGAAGAACCTT CTAGAAGAGCAGCGGTTGATTTGTTCGCCGAGATCGGTGTTCATGTCACCGTCGATGATTTTGTGCCATTCACGGGAACCGGAGAAGCAAACTTTTTGGG GGGTGTGGCTTCTGTTAAGGGGGTTAAAGGATTTGACATTGAAGCTGCAAAAAAGAGATTCTTTGAAATATATTTAGACAAGTATGCAAAACCAGATTCT GGAATAGGATTTCCAGGTGCCTTTGAACTCATTTCTCAGTGTAAAAACAAAGGCCTTAAAGTGGCCGTTGCATCTAGTGCTGATCGTATAAAGGTCGATG CAAATCTGGCTGCTGCTGCTTTACCATTGTCAATGTTTGATGTGATTGTGTCTGCTGATGCTTTTGAAAACTTGAAACCGGCTCCGGATATATTCTTAGC TGCTTCAAGTATTTTAAATGTGCCCCCCGGTGAGTGCGTTGTTATAGAAGATGCGCTAGCTGGAGTGCAAGCTGCCAAAGCTGCCCAAATGAGATGCATA GCTGTCAGGACCACATTATCAGATGAGATTTTAGAATCTGCTGGTCCAATACTTATCCGAGATGACATTGGAAATGTTTCAATCGATGATATTCTGAGTG GTGGCTCTGTTGGATATAATAAGAGTATGCAGGGCTTGGAAACTCTAAACAATTCTTCACGATCTTCATCTACTGTGCTTCTTGGAAAAACAGATGATGA AGATGGAAAAACTACCGGAGGTACTGATGAGGGAATTTTCTCAATTGAAGGGTTGCAGGGTTCTCGACGAGATATACTGAGATTTGGAAGTCTGGGCATT GCTATCTCTTGCCTAGTCTTCACCTCAAGTAATTGGAAGGCAATGCAATATGCTTCCCCGAAAGCAGTTTGGAATCTCTTCTTTGGTGTTACCAAACCAT CTATGGAAGAGAAAGAAGGTAACTCAAGATATGATAGGATTCAGCAATTTGTGAACTACATAACTGATCTAGAAAGCAGGGGAAATGCTCAGATTGTTCC AGAATTTCCAACCAAACTTGATTGGCTGAATACAGCTCCGCTTCAGTTTGGCAGGGACCTAAAAGGAAAAGTTGTTCTGCTGGATTTCTGGACTTATTGT TGTATAAACTGTATGCATGTGTTGCCTGACCTAGACTTTTTGGAGAAAAAATACAAAGATATGCCGTTCGTCGTTGTGGGTGTTCACTCTGCAAAATTTG ATAATGAGAAAGATTCTGAAGCTATTCGCAATGCAGTTTTACGCTATGACATTACTCACCCTGTAAGCTTGAAGTTGGACTTCAATTGATGTTTCTAAGC ATTTTTTTCTGGACACTTTAACATGGGTTGTCAATGATGGAGACATGTACCTTTGGCGGCAGTTGGGCATAAATTCATGGCCAACGTTTGCTATAATTGG CCCAAATGGTAAGCTCCTTGCACAACTTGCAGGAGAAGGTCGTAAGAAGGATCTTGATGATTTTGTGGAGGCAGCACTTCTGTTTTATGGAAAACAGAAC ATGTTGGACAACACACCAATTACATTGAATTTGGAGAAAGACAATGATCCTCGCCTATTGACATCCCCATTGAAGTTTCCTGGCAAGCTAGCTGTTGATG TCCTCAATAATAGGCTTTTCATTTCGGACAGCAACCATAACCGCATAGTTGTTACTGACCTCAATGGGAATTTTGTTGTACAAATTGGGAGCAGCGGGGA GGAAGGTTTGCAGGATGGCTCCTTTGATGATGCCAACTTCAACCGTCCTCAGGGCCTTGCTTATAATCCAAAGAAAAATATCCTTTATGTCGCAGACACC GAAAACCATGCTTTAAGGGAAATTGATTTTGTTGATGAGAAAGTGCGTACTCTTGCTGGAAATGGGACAAAGGGATCTGATTATATTGGAGGAGGAAAAG GAGACACACAGCTTCTTAATTCCCCTTGGGATGTATGCTTTCATCCAATTGAAGAAAAAGTTTATATTGCTATGGCTGGCCAACATCAGATTTGGGAGCA CAATATATTGGATGGAATTACAAGGGCATTTAGTGGAGATGGTTATGAAAGAAATTTAAATGGATCAAGTTCTACAAGCACATCATTTGCACAACCTTCT GGTCTTTCATTGTCTCAAGATCTAGCGGAGATCTACATAGCTGATAGTGAGAGTAGTTCCATTCGAGCTGTTAATCTGAAAACTGGAGGATCTCGGTTGC TAGCTGGTGGTGACCCAATTTTCTCAGACAACTTGTTTAAGTTTGGTGACCAAGATGGAATAGGCTCTGAAGTACTTTTTCAACATCCATTAGGGGTTGT GTCTGCAAAGGATGGTGAAATTTATATCACAGATAGCTACAATCACAAGATCAAGAAGTTTGACCCAACTAGTAAAAGAGTTAGCACCATTGCAGGGACA GGAAAAGCTGGTTTCAAGGATGGGACAGCTGTGACAGCTCAGGTTGGTAAAACATGATGTGCCCTTATATACCAAAATCATCTCCTAGTTTGAAACATAT AATTCATTTTATATCTTCCTTTTAAATGGTTAAAAGAGAATGATTTTGATGAAACAATTGTGGTGACTTCACATATAAATATAATGCATAGGTTTGCATT TACACAGGCTGATCAAGCACTATAGATGACAAGTTTCTGAAAAATAGCAATCAATTCTCCTAGGCTTTGGAATATCTGATGCACTCATCTCATTGTTATT CTTCTGCAAGTTGTTTGTTGACCATAGGGATTTAAAGAGAATCACCATAAAAATATTTATGCTGTTGAATGAAAGTTGAAAGGGTACAAGTGGTGAAAGC TATGCTAGTTAAGATTGCAAAACTGACCGAGTCGGATCATATGTCATTCCCCATGATTTGATAGAAAAAATCTATATTTAATTGGCCACACAAACAAGTG TCAGCAGAACGAAGTAAAACGAATGAAGTCTTTCTTACCTAATAGCCACATATGTATATTAACATATTTATCAATGATCTTGCAGCTTTCTGAACCATCA GGAATTGTTGAAGGGGACAATGGGAGACTATTCATAGCCGATACAAACAACAGTTTAATTCGATATCTAGATTTGAACAATGATGAATATGCACTCAGTA CCTTAGAGCTTAAAGGTTTTCAGCCTCCTAAACCCAAATTGAGATCTTTTAAACGTCTCAGGAGACGAACATCAGCTGACACAGAAACCATTAACATTGA TGCCATTTCATCCAATGAGGGAAACTTGTCTATTGAAATATCATTACCAAATGAGTATCATTTCTCGAAGGAAGCACGCAGTAGATTTAGTGTTGATATT GAGCCTGAAGATGCTGTGAATATTGATCCACTAGATGGATTCCTTAATCCAGAAGGATCTGCAACCCTTCACTTTAAGAGATCCTCTAACTCTGCTTCAG TGGCAAGAATTAATATTAAGGTTTACTATTGCAAGGAAGATGAGGTTTGTTTGTACCAATCATTGCTGTTTGAGGTCCCTTTCCGAGACGGAGCTCCTAA CTCTACCAAAGCGGATGTCACCCTTGCACATTTTGTGAAGCCCAAAACTTCAACCAGCAGCTCACTGCAGTCAGTTGGCATGTGATACTGTAAACCAGTT ACTCTGAAAGTGTGTTACACAATAAGTTTGAGTGAATAGAGGAAGATGGCAGACCTAGAAAACATGCTTCTTGAGGCAGCTGGGAGAACCAATTCTCCAG TGAGAAAGAGGAGCAAGATTGGAAACTCGAGAGTTAAGCGCGACGGTGCGGGGAGTGATTCGAGAGTGGAAGATTCGGATGAGGGTGGTGCAAGCAAAAA GCCATCAAGAAGTGCATCACATGTTCCGTTGAAGAAGAGGTTGGATCTAAGCAGAAGAGGTAGTAGCACTAGTAAAAATGAGCATGGAGGAGGTGAGTTA GTAGAAGATGGGGTTCCAGTTTGTGAAGGTGGCAGTGGAAGCAGTGAAGAATCTGATGTTGGAAGTGATCTTTATAAGAATGAGGATGACAAACAAAGGC TTGCGAAAATGACTGAACTTGAAAGAGAAATGATTTTGTCTGATAGAGCAGCTAAGAAAGGTGAAAAGGAATTTAAAGAGAAACTGAAAATGAAGAGGGA CAATAACAACAACAACAATGTAAATCAATCACATCATCCTTCTTCGTCTTCCAAGGTTCGTTCATCTACGAGACATGCCGAGAAAACAGCAGCTAAGGGA GATGTCCTAAGCGAATTGCGCGCCAAAAGGATGAAACAGCAGGTCCTAGACACTCGTGGTAAATCGGTAGGAAGTGCTTCGAAACCAAACTCAACAAACA AGGGAGTGAAGCCAAAACCTACTAGTCCAAGTAGTTCTAGTCAGAGTGAGAGTGGTGTGAGGTCAGATAGTGAAAGAGAATCATCTGATGATGGTGGCTT GGCTGACAGTGATGACGATAAGAACATGGTCGAATCAAACGTTCCAACATTTGAGGATATAAAGGAAATCACCATTAGGAGGTCAAGGCTTGTGAAATGG TTGAATGAGCCATTTTTTGAGGACTTAATTGTTGGTTGTTTTGTAAGAATTGGAATTGGAAGGTCAGAAAGTGGACCTGTATATAGGCTTTGCATGGTTC AGAATGTTGATGCAGGTGACCCAAATAAACCTTACAAGGTAGAAAATAGAGTCACTCATAAGTATCTGATTTGCATATGGGGTAGTGAAAACTCGGCTAA AAAGTTTCAAGTGGCTGTGATCTCAGATTCTACACCTTTAGAGAAAGAGTACAGACAATTGCTTAGGGAAGTTGAGAGAAGTTGCAGCCAAATGCCTAGT AAGTTGAATGTATTGGAAAAGAGAGAGGCTATAAGAAGAACCAACACATACATTTACTCAGCTGCCACTGTGAAGCAAATGCTAGAGGAGAAAAAATCTG CTTCATCTAGGCCACTCAACATTGCGGTAGAGAAGGATCGTTTGAAGAACCAATTGGAAATAGCAAAAAGCAAGAATGATGGAGCTGAGATGGATAGGAT CTTAGCGAAGCTTCAGGATTTGGAAGTGTTACGCAAAGCGCGGGAGAATGATGCCAAGGCTATTAGGCTGACTGAGATGAACAGAAAGAACAAGGTTGAG AACTTCAAAAACTTGTCTGAGCATAAGAATGTGAATGTAAATTTGAAAGCAGGAGAGGAAGGGTGTGATCCATTTTCAAGGAGGTGGACAAGGTCTAGGA ATTACTACACTTCCGAGCCGGGGAAAGAGAATAAAGATGGTGAGAAAAATGAAGCTAAAGGAGAGAAGGATAAAACTGTTGGTGAAGCTAGTATGGGAGA AGAAAAACAAGTCACAACAAAGGTTAGCATCGAAGCCACAGAAGTGGCATTGCAAGATTCTGCTAATGAAGGGAAGTTAGGTGATACTATTGCTCCTGCG GATCAAATAACAGAGTCACATATGCTGCATGATTTTGAATTGCCGATTTCGTTGGACGCACTTAAGAATTTCGGTGGACCACAAGGACTTAAAAATGGGT TTTTGGCAAGGAAACAAAAAATAGAAGCAACAGTTGGGTGCCAAGTTTCTGAGAATGATGGGAGTAGGCATGCTCTCACATTAACTATTAGTGATTATAA GAGAAGAAGAGGGCTTCTGTAGAGTTTAGAAATTGTCTGACCCTTGTGTAGTCTAGATATACTTTTGATGCTACAAAATGCTCTTGAAATAGGAATTTTT TTTTTCTTGTACCATTTTATGTTCATCAGCTATGTGAGCCAAGCAATATTTTCAGCTGAATAAAGTAGTAGACATGGAATAAGAGGTGCTTAATCTTTTC C BLAST |
| Tissue | flowers |
| Gene name | LI_gene_52341; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_75115
| Blastp | Protein RTF1 homolog from Arabidopsis with 53.03% of identity |
|---|---|
| Blastx | Protein SUPPRESSOR OF QUENCHING 1, chloroplastic from Arabidopsis with 67.7% of identity |
| Eggnog | Rtf1, Paf1 RNA polymerase II complex component, homolog (S. cerevisiae)(COG5296) |
| Kegg | Link to kegg annotations (AT1G61040) |
| CantataDB | Link to cantataDB annotations (CNT0001568) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019422536.1) |
| Pfam | Plus-3 domain (PF03126.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |