| Id Trinity | FTRINITY_DN55543_c1_g1_i24 |
|---|---|
| Name Transcript | Ll_transcript_75117 |
| Sequence | ATTATTTGATGACACTTGAAACATGATTTGGTCATGTGGTCACGAAATAGATAAGGTACCAAGAGAAGAAGAAAGGTAGAAAGGTCACTAACATCACACG TTGCATGACGACTTAAGCAATTTAATTTACAAATAAAATCTCTCTCCGCCACTCAAAACTGATTACAGATTATAATCACTTAAATTTTGAAGCAGCTTCA TGGCTTTTGAAACTGCTTACTCTTCTCTATCACTTCCAAATTCAACTACCTTCTTACACTCTTCTTCTTCTTCCAATATCCGAAGACTCAAATCTACTTC GCTTCCTTCTAGATTCTTCTTCAACTTCCAATCGCAACGCATCGTTTTGACGCCGAAAAAGCTTGTGGTGATGAAACCTTGCGCGGTGAGGATTGAAGAG AAGAATAGTAACGTTGCTGGAAGTGAAGGAGGAGAATGGGAGAAGGTTTCTGCGGTGTTGTTTGACATGGACGGTGTGCTTTGTAATAGTGAAGAACCTT CTAGAAGAGCAGCGGTTGATTTGTTCGCCGAGATCGGTGTTCATGTCACCGTCGATGATTTTGTGCCATTCACGGGAACCGGAGAAGCAAACTTTTTGGG GGGTGTGGCTTCTGTTAAGGGGGTTAAAGGATTTGACATTGAAGCTGCAAAAAAGAGATTCTTTGAAATATATTTAGACAAGTATGCAAAACCAGATTCT GGAATAGGATTTCCAGGTGCCTTTGAACTCATTTCTCAGTGTAAAAACAAAGGCCTTAAAGTGGCCGTTGCATCTAGTGCTGATCGTATAAAGGTCGATG CAAATCTGGCTGCTGCTGCTTTACCATTGTCAATGTTTGATGTGATTGTGTCTGCTGATGCTTTTGAAAACTTGAAACCGGCTCCGGATATATTCTTAGC TGCTTCAAGTATTTTAAATGTGCCCCCCGGTGAGTGCGTTGTTATAGAAGATGCGCTAGCTGGAGTGCAAGCTGCCAAAGCTGCCCAAATGAGATGCATA GCTGTCAGGACCACATTATCAGATGAGATTTTAGAATCTGCTGGTCCAATACTTATCCGAGATGACATTGGAAATGTTTCAATCGATGATATTCTGAGTG GTGGCTCTGTTGGATATAATAAGAGTATGCAGGGCTTGGAAACTCTAAACAATTCTTCACGATCTTCATCTACTGTGCTTCTTGGAAAAACAGATGATGA AGATGGAAAAACTACCGGAGGTACTGATGAGGGAATTTTCTCAATTGAAGGGTTGCAGGGTTCTCGACGAGATATACTGAGATTTGGAAGTCTGGGCATT GCTATCTCTTGCCTAGTCTTCACCTCAAGTAATTGGAAGGCAATGCAATATGCTTCCCCGAAAGCAGTTTGGAATCTCTTCTTTGGTGTTACCAAACCAT CTATGGAAGAGAAAGAAGGTAACTCAAGATATGATAGGATTCAGCAATTTGTGAACTACATAACTGATCTAGAAAGCAGATTATGATTAGTATCTTTTTA CTGCCCAAGGGGAAATGCTCAGATTGTTCCAGAATTTCCAACCAAACTTGATTGGCTGAATACAGCTCCGCTTCAGTTTGGCAGGGACCTAAAAGGAAAA GTTGTTCTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCTGACCTAGACTTTTTGGAGAAAAAATACAAAGATATGCCGTTCG TCGTTGTGGGTGTTCACTCTGCAAAATTTGATAATGAGAAAGATTCTGAAGCTATTCGCAATGCAGTTTTACGCTATGACATTACTCACCCTGTTGTCAA TGATGGAGACATGTACCTTTGGCGGCAGTTGGGCATAAATTCATGGCCAACGTTTGCTATAATTGGCCCAAATGGTAAGCTCCTTGCACAACTTGCAGGA GAAGGTCGTAAGAAGGATCTTGATGATTTTGTGGAGGCAGCACTTCTGTTTTATGGAAAACAGAACATGTTGGACAACACACCAATTACATTGAATTTGG AGAAAGACAATGATCCTCGCCTATTGACATCCCCATTGAAGTTTCCTGGCAAGCTAGCTGTTGATGTCCTCAATAATAGGCTTTTCATTTCGGACAGCAA CCATAACCGCATAGTTGTTACTGACCTCAATGGGAATTTTGTTGTACAAATTGGGAGCAGCGGGGAGGAAGGTTTGCAGGATGGCTCCTTTGATGATGCC AACTTCAACCGTCCTCAGGGCCTTGCTTATAATCCAAAGAAAAATATCCTTTATGTCGCAGACACCGAAAACCATGCTTTAAGGGAAATTGATTTTGTTG ATGAGAAAGTGCGTACTCTTGCTGGAAATGGGACAAAGGGATCTGATTATATTGGAGGAGGAAAAGGAGACACACAGCTTCTTAATTCCCCTTGGGATGT ATGCTTTCATCCAATTGAAGAAAAAGTTTATATTGCTATGGCTGGCCAACATCAGATTTGGGAGCACAATATATTGGATGGAATTACAAGGGCATTTAGT GGAGATGGTTATGAAAGAAATTTAAATGGATCAAGTTCTACAAGCACATCATTTGCACAACCTTCTGGTCTTTCATTGTCTCAAGATCTAGCGGAGATCT ACATAGCTGATAGTGAGAGTAGTTCCATTCGAGCTGTTAATCTGAAAACTGGAGGATCTCGGTTGCTAGCTGGTGGTGACCCAATTTTCTCAGACAACTT GTTTAAGTTTGGTGACCAAGATGGAATAGGCTCTGAAGTACTTTTTCAACATCCATTAGGGGTTGTGTCTGCAAAGGATGGTGAAATTTATATCACAGAT AGCTACAATCACAAGATCAAGAAGTTTGACCCAACTAGTAAAAGAGTTAGCACCATTGCAGGGACAGGAAAAGCTGGTTTCAAGGATGGGACAGCTGTGA CAGCTCAGGTTGGTAAAACATGATGTGCCCTTATATACCAAAATCATCTCCTAGTTTGAAACATATAATTCATTTTATATCTTCCTTTTAAATGGTTAAA AGAGAATGATTTTGATGAAACAATTGTGGTGACTTCACATATAAATATAATGCATAGGTTTGCATTTACACAGGCTGATCAAGCACTATAGATGACAAGT TTCTGAAAAATAGCAATCAATTCTCCTAGGCTTTGGAATATCTGATGCACTCATCTCATTGTTATTCTTCTGCAAGTTGTTTGTTGACCATAGGGATTTA AAGAGAATCACCATAAAAATATTTATGCTGTTGAATGAAAGTTGAAAGGGTACAAGTGGTGAAAGCTATGCTAGTTAAGATTGCAAAACTGACCGAGTCG GATCATATGTCATTCCCCATGATTTGATAGAAAAAATCTATATTTAATTGGCCACACAAACAAGTGTCAGCAGAACGAAGTAAAACGAATGAAGTCTTTC TTACCTAATAGCCACATATGTATATTAACATATTTATCAATGATCTTGCAGCTTTCTGAACCATCAGGAATTGTTGAAGGGGACAATGGGAGACTATTCA TAGCCGATACAAACAACAGTTTAATTCGATATCTAGATTTGAACAATGATGAATATGCACTCAGTACCTTAGAGCTTAAAGGTTTTCAGCCTCCTAAACC CAAATTGAGATCTTTTAAACGTCTCAGGAGACGAACATCAGCTGACACAGAAACCATTAACATTGATGCCATTTCATCCAATGAGGGAAACTTGTCTATT GAAATATCATTACCAAATGAGTATCATTTCTCGAAGGAAGCACGCAGTAGATTTAGTGTTGATATTGAGCCTGAAGATGCTGTGAATATTGATCCACTAG ATGGATTCCTTAATCCAGAAGGATCTGCAACCCTTCACTTTAAGAGATCCTCTAACTCTGCTTCAGTGGCAAGAATTAATATTAAGGTTTACTATTGCAA GGAAGATGAGGTTTGTTTGTACCAATCATTGCTGTTTGAGGTCCCTTTCCGAGACGGAGCTCCTAACTCTACCAAAGCGGATGTCACCCTTGCACATTTT GTGAAGCCCAAAACTTCAACCAGCAGCTCACTGCAGTCAGTTGGCATGTGATACTGTAAACCAGTTACTCTGAAAGTGTGTTACACAATAAGTTTGAGTG AATAGAGGAAGATGGCAGACCTAGAAAACATGCTTCTTGAGGCAGCTGGGAGAACCAATTCTCCAGTGAGAAAGAGGAGCAAGATTGGAAACTCGAGAGT TAAGCGCGACGGTGCGGGGAGTGATTCGAGAGTGGAAGATTCGGATGAGGGTGGTGCAAGCAAAAAGCCATCAAGAAGTGCATCACATGTTCCGTTGAAG AAGAGGTTGGATCTAAGCAGAAGAGGTAGTAGCACTAGTAAAAATGAGCATGGAGGAGGTGAGTTAGTAGAAGATGGGGTTCCAGTTTGTGAAGGTGGCA GTGGAAGCAGTGAAGAATCTGATGTTGGAAGTGATCTTTATAAGAATGAGGATGACAAACAAAGGCTTGCGAAAATGACTGAACTTGAAAGAGAAATGAT TTTGTCTGATAGAGCAGCTAAGAAAGGTGAAAAGGAATTTAAAGAGAAACTGAAAATGAAGAGGGACAATAACAACAACAACAATGTAAATCAATCACAT CATCCTTCTTCGTCTTCCAAGGTTCGTTCATCTACGAGACATGCCGAGAAAACAGCAGCTAAGGGAGATGTCCTAAGCGAATTGCGCGCCAAAAGGATGA AACAGCAGGTCCTAGACACTCGTGGTAAATCGGTAGGAAGTGCTTCGAAACCAAACTCAACAAACAAGGGAGTGAAGCCAAAACCTACTAGTCCAAGTAG TTCTAGTCAGAGTGAGAGTGGTGTGAGGTCAGATAGTGAAAGAGAATCATCTGATGATGGTGGCTTGGCTGACAGTGATGACGATAAGAACATGGTCGAA TCAAACGTTCCAACATTTGAGGATATAAAGGAAATCACCATTAGGAGGTCAAGGCTTGTGAAATGGTTGAATGAGCCATTTTTTGAGGACTTAATTGTTG GTTGTTTTGTAAGAATTGGAATTGGAAGGTCAGAAAGTGGACCTGTATATAGGCTTTGCATGGTTCAGAATGTTGATGCAGGTGACCCAAATAAACCTTA CAAGGTAGAAAATAGAGTCACTCATAAGTATCTGATTTGCATATGGGGTAGTGAAAACTCGGCTAAAAAGTTTCAAGTGGCTGTGATCTCAGATTCTACA CCTTTAGAGAAAGAGTACAGACAATTGCTTAGGGAAGTTGAGAGAAGTTGCAGCCAAATGCCTAGTAAGTTGAATGTATTGGAAAAGAGAGAGGCTATAA GAAGAACCAACACATACATTTACTCAGCTGCCACTGTGAAGCAAATGCTAGAGGAGAAAAAATCTGCTTCATCTAGGCCACTCAACATTGCGGTAGAGAA GGATCGTTTGAAGAACCAATTGGAAATAGCAAAAAGCAAGAATGATGGAGCTGAGATGGATAGGATCTTAGCGAAGCTTCAGGATTTGGAAGTGTTACGC AAAGCGCGGGAGAATGATGCCAAGGCTATTAGGCTGACTGAGATGAACAGAAAGAACAAGGTTGAGAACTTCAAAAACTTGTCTGAGCATAAGAATGTGA ATGTAAATTTGAAAGCAGGAGAGGAAGGGTGTGATCCATTTTCAAGGAGGTGGACAAGGTCTAGGAATTACTACACTTCCGAGCCGGGGAAAGAGAATAA AGATGGTGAGAAAAATGAAGCTAAAGGAGAGAAGGATAAAACTGTTGGTGAAGCTAGTATGGGAGAAGAAAAACAAGTCACAACAAAGGTTAGCATCGAA GCCACAGAAGTGGCATTGCAAGATTCTGCTAATGAAGGGAAGTTAGGTGATACTATTGCTCCTGCGGATCAAATAACAGAGTCACATATGCTGCATGATT TTGAATTGCCGATTTCGTTGGACGCACTTAAGAATTTCGGTGGACCACAAGGACTTAAAAATGGGTTTTTGGCAAGGAAACAAAAAATAGAAGCAACAGT TGGGTGCCAAGTTTCTGAGAATGATGGGAGTAGGCATGCTCTCACATTAACTATTAGTGATTATAAGAGAAGAAGAGGGCTTCTGTAGAGTTTAGAAATT GTCTGACCCTTGTGTAGTCTAGATATACTTTTGATGCTACAAAATGCTCTTGAAATAGGAATTTTTTTTTTCTTGTACCATTTTATGTTCATCAGCTATG TGAGCCAAGCAATATTTTCAGCTGAATAAAGTAGTAGACATGGAATAAGAGGTGCTTAATCTTTTCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_52341; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_75117
| Blastp | Protein RTF1 homolog from Arabidopsis with 53.03% of identity |
|---|---|
| Blastx | Protein SUPPRESSOR OF QUENCHING 1, chloroplastic from Arabidopsis with 70.65% of identity |
| Eggnog | Rtf1, Paf1 RNA polymerase II complex component, homolog (S. cerevisiae)(COG5296) |
| Kegg | Link to kegg annotations (AT1G61040) |
| CantataDB | Link to cantataDB annotations (CNT0001568) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019422591.1) |
| Pfam | Plus-3 domain (PF03126.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |