| Id Trinity | FTRINITY_DN55634_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_126936 |
| Sequence | CAACAATATCAATAGTCTCTCTTTCTTTCTTTCTTTCTTTCTTTGTTTCTCATCGGTTTAGTTATTATTAATTATTTAGAAAACAAAAAAACAAAAACAT GAAGGGTCGGACTAAGGTGGTGTTACGGCACTTGCCCCCTTCGCTTTCTGAATCCTCTCTCTTTCAACAAATTGATGCTGTCTTCTCCGATCGTTACCAC TGGTTCTCTTTCCGTCCTGCCAAATTCAGCCACAAGCATACATCATATTCCAGGGCCTACATTGACTTCAAGACTCCAGAGGACGTTATAGACTTCGCTC ACTTCTTTAATGGCCACCTTTTTGTTAATGAAAAAGGAACCCAGTTCAAAGTCCTTGTTGAATATGCTCCTTCACAACGTCTTCCAACTCACTCCTCTAA AAAGGATGCCCGTGATGCTACCATATACAAAGATTCTGATTATCTCCACTTTCTTCAACATCTCGCCAAACCTGTTGAGAATCTTCCGAGTGCTGAGATA CAGTTGGAGAAGAGGGACGCAGAACGATCTGCTGCTGCAAAGGATGTTCCTATCGTTACCCCATTGATGGACTTTGTGCGCCAGAAAAGAGCTGCCAAAG GACCTCGGAGATCAATTTCTAATGGAAAAGTGAGTAGAAGAACTGTCACATCATCAAATGGGAGTCCTAGCTCTGCTGTGTCAAGACGAGGTTCTGGGAA GAAGAGAGTTCCCACTACAATGTATGTTGCAAGGAACCCGGGCAAAAATTCTACTATAAAAGACAAATCAACTTACACTTCGGTTCCTAGGCAAGGTGAT CAACATCTTTCAAATAAAACTTCAACTGTCACTTCTTCAGGAGGAACTCAAACAGTTGATGCAAATGCTAGAGCGTCTGGAAGTAATGATGTTGGAAAGA AGAAAATCCTGCTTCTCAAAGGGAAGGAACGAGAGATAATTACTATATCTGAGTTTGACAGTATGTCACAACATAACAGCATAACATCTTCATCTAAAAC TGCTCTTGATTCAACAGTTCTGAAGCGGAGTCACCGGCCTGAAGGTACTGGAAGGATTATCAGAAGCATACTTTCAAACAAAGATTTGCATCATAGTCAG TCTTCCAGGCCTCACTCAGAGCAGCAAATCCAAACATCCAATCTAGAAAAAGAAAAACAACCACCTCGCTCCTTACATGTTCCGATGATATTGAAGAGCA CTAATGGGGCACCAGAGAATAGGATTGGTATGCATGATTTACATGTTTCTAGTGAGAGGCAGGAGAGGCGTGTTAGGCATAGGGATAGACCTGATCGCGG TGTATGGACAAATCGTTCCAATGGGGGTGATGACTCTTTGTCATTGTCTGCATCCTCACAAGCAGATATTTTGGAAGGTGCATGTTTTATTTTTACCTAT GATTTTCTTTTGTAAGGTGCATGCTTTATTTGTCCATGATGCATGCTTTATTTTCTGGAAAAGGGGGGAGGTTAGGGCACCGGTATCCTTAATATACTAC TGACATATTGATGCTTGCGGTAATACCTTTTGTCTGTGGCAAATTTATTACAGCCTGCTTACGTACTCTCCAAAATTTGGAATTTTTTCCATGTATTGCA TATGAAACAGGAGGTCAAGCAGAGCTGAAACACGACAAGCCAAATGCAAGAAGTGGGGAGCTAAAATCTCTTGGCAGTGGCCGTGCCAGTCATTCATCAG AAAATGGTTGGTTTTGGCTTTGGGAAGCATTTACTTGGATATTTTTATGCTTGCATTTTGGTTGTTTTCTACTTAAATTTTGTTGCCATGTATACTTAGG TTTCAGTAAGCATTTTGGTCGCCGTGGTCCAACACATGGGGTGAAGGATGTTGATGGCCACTCACTTTCAAGTGAGGGGAGGCCTCCTCGAAGAACTGGT GGCTCTGCTTATGGTTCCCAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_53142; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_126936
| Blastp | Regulator of nonsense transcripts UPF3 from Arabidopsis with 44.5% of identity |
|---|---|
| Blastx | Regulator of nonsense transcripts UPF3 from Arabidopsis with 59.07% of identity |
| Eggnog | UPF3 regulator of nonsense transcripts homolog(ENOG41122XD) |
| Kegg | Link to kegg annotations (AT1G33980) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440409.1) |
| Pfam | Smg-4/UPF3 family (PF03467.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |