| Id Trinity | FTRINITY_DN55827_c1_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_267338 |
| Sequence | GGCGAACTCGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTTTGAAGATGCTGTACTCATTAGTGAGCGTTTGGTCTATG AGGATATTTATACTTCTTTTCACATACGGAAATATGAAATTCAGACTCATGTGACAAGTCATGGTCCGGAAAGAATCACTAATGAAATTCCACACCTCGA AGCCCATTTACTCCAAAATTTAGACAAAAATGGAATTGTGATCCTGGGATCTTGGGTTGAGTCAGGCGATATTTTAGTGGGTAAATTAACCCCCCAAATG GCGAAAGAATCCTCGTATGCCCCAGAAGATAGATTATTACGAGCTATACTTGGCATTCAGGTATCCACCTCAAAGGAAACTTGTCTAAAACTACCTATAG GCGGGAGAGGTCGAGTTATTGATGTGAGATGGATCCACAAAAAGGGGGTTTCTAGTTATAATCCAGAAACGATTCGTATCTATATTTTACAGAAACGTGA AATTAAAGTAGGTGATAAAGTGGCCGGGAGACATGGAAATAAAGGTATCGTTTCAATAATTTTGTCTAGACAGGATATGCCGTATTTGCAAGATGGAAGG CCCGTTGATATGGTCTTCAATCCATTAGGGGTACCTTCACGAATGAATGTAGGACAGATATTTGAATGTTCACTAGGATTAGCGGGGTTTATGCTAGATA GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCGAGAAAACTTGTGTTTTCTGAATTATATGAAGCCAGTAAACAAACAGCGAA TCCATGGATATTTGAACCCGAGTATCCGGGAAAAAGCCGAATAGTTGATGGAAGAACAGGGAATCTTTTTGAACAGCCTGTTTTAATGGGAAAGCCCTAT ATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACGCAACAACCCCTTAGAGGAAGGGCCAAGC AAGGAGGACAGCGGGTAGGCGAAATGGAGGTTTGGGCCCTCGAGGGATTTGGTGTTGCTCATATTTTACAAGAAATGCTGACTTATAAATCTGATCATAT TAAAGCTCGCCAAGAAGTACTCGGGATTACGATCATTGGCGGAACAATACCTAAACCTGCGGATGCTCCAGAATCTTTTCGTTTGCTCGTTCGAGAATTA CGATCTTTGGCCCTGGAACTGAATCATTTCCTTATATCTGAGAAGAACTTCCGTATTCATAGGAAGGAAGCTTAATTCGCCCGAATCTTACTTTTGATTC TATGATTGATCAGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTTCTTGGGCAAAAAAATTCTACCTAATGGAGAGATAG TTGGGGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAGCCTGAAAAAAGTGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGTGG GATTTGTGCTTGTGGAAATTATCGAGTCATCGGGGATAAGAAAGACGATAAACAATTTTGTGAACAATGCGGAGTAGAATTTGTTGATTCTCGAATACGT AGGTATAAAATGGGCTATATAAAACTGGCATGCCCCGTAACCCACGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAATCTC TGAAAGAATTAGAAGGTCTAGTATACTGCGATTTTTCGTTTGCTAGGCCCGTAGTTAAAAAACCCACTTTCTTACGATTACGAGGTTTATTTGAATATGA AATCCAATCCTGGAAATACAACATCCCGCTTTTTTTTACTACCCAAGGTTTCAATATATTTCGAAATCGAGAAATTTCTAGTGGAGCGGGTGCTATCCGA GAACAATTAGCCGATCTAGATTTGAGAATTCTTATTGATTCTTCGTTGGTAGAATGGAAAGGATTAGCGGAAGAGGGATCCGCGGACAATGAAAATGAAT GGGAAGATCGAAAAGTTGGAAGAAGAAAGAATTTTTTTAGTTCGGCGCATGGAATTAGCTAAGCATTTTATCCGAACAAATATAGAACCAGAATGGATGG TTTTATGTCTCTTACCTGTTCTTCCTCCCGAATTGAGACCTATTATTCAAATAGACGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAG AGTTATCTATCGGAACAATACCCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGGGAATTAGTCATGTGTCAGGAGAAATTGGTACAAGAAGCC GTAGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGAGATGGTCATAATAAGGTTTACAAATCGTTTTCAGATTTAATTGAGGGCAAAGAGG GACGATTTCGTGAGACTCTACTTGGCAAACGGGTTGATTATTCGGGGCGTTCTGTCATTGTCGTAGGTCCATCACTTTCATTACATCGATGTGGATTGCC CCGCGAAATAGCAATAGAACTTTTCCAGACATTTGTAATTCGTGGTTTAATTCGAAAACAATTTGCTTCGAACATAGGAATTGCTAAGAGTAAAATTCGG CAAAAGGAACCCATTGTATGGGAAATACTTCAAGAAGTTATGCGGGGACATCCCATATTGCTGAATAGAGCGCCCACTTTGCATAGATTAGGCATACAGG CATTCCAACCCATTTTAGTAGAAGAGCGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCA TGTGCCCTTATCCTTGGAGGCTCAAGCAGAAGCTCGTTTACTTATGTTTTCTCATACGAATCTCTTGTCTCCGGCTATTGGGGATCCCATTTCCGTACCA ACTCAAGATATGCTTATTGGGCTTTACATATTAACGAGCGGGAATCGTCGAGGTATTTGCGCAAATAGGTATAATACGCGTAATTGCAGAAATTATAAAA ATGAAAGAATTCACGAAAATGACTATAAGTATACGAAAAAAAAAAAATCTTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGACAGAAAAGAAT CAATTTCGACAGTCCTTTGTGGCTCCGGTGGCGACTAGATCAACGCGTTATTTCGTCAAGAGAAGCTCCTATCGAAGTTCACTACGAATCTTTAGGTACC TATCATGATATTTATGAGCATTATCTAGTAGTCAGAAGTATAAAAAAACAAATTCGTTGTATATATATTCGAACCACTGTTGGTCATATTTCTTTTTATC GAGAAATCGAAGAAGCTATACAAGGCTTTTGTCGAGCCCATTCATAGGGTATCCAATCATATACATAGATGGGTTGGTATCTAACCTAAGTCAATTTAGG ATATCGGTGTGAATTCCGGTCTTCCCGGTTCGACTATATGATCCTAACTTATAAATTTCTACGCGAATCAAGCTAAAGAAAAGGAAGTTTTACAATCATT GACTCAAATCCATTGTTGAACCGAACTCCACTGATCGGAATATGGAGGTACTTATGGCAGAACGGGCCA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_54793; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_267338
| Blastp | DNA-directed RNA polymerase subunit beta from Soja with 93.4% of identity |
|---|---|
| Blastx | DNA-directed RNA polymerase subunit beta' from Soja with 91.95% of identity |
| Eggnog | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0085) |
| Kegg | Link to kegg annotations (3989291) |
| CantataDB | - |
| Mirbase | bdi-MIR5056 (MI0017945) |
| Ncbi protein | Link to NCBI protein (YP_008963596.1) |
| Pfam | RNA polymerase Rpb2, domain 6 (PF00562.27) |
| Rfam | Intron_gpII (RF00029) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |