| Id Trinity | FTRINITY_DN56011_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_71646 |
| Sequence | AAGATAAGGATTTTAAGCCTCTCCATTCATTTCAACTTCCTCTATCTTCATTACCCATTTCTTATTTTCCCACAAAGTTTTCTTTTTGCACCTTCTGAGC AGATGATCTGATTCTGAAATATAACCGAGTTTCACAATTCTAGCCACCATGAACCCTGTACTTTCATGCACTGTCAGCAATGTTTCACTTATTCCTGGAA TTGCCTTTCCAGCAAAGGTGAATAATTCTTTAACAACATTCAGTTTGTCAAAGAGCTCTGTAAAGTCTGTGTCGTCAACTCGGAGATGTCTCTTACCTTC ATTTGTTGCCAGTGGAGTGTTTCCAAAGAACAAAAGGATATTCCCTTTTCATAATAAATCTAGAACCAGCATATCAGCCACAGGAACTGAACTAGCAGTA GAGGAATCAGGTTCAACTGTTGCAGGTGAAGTTTCTGCTGAAACTCCTTCAGATGAAGTTGGAATAAGTGATGATTCATCACCTAAGTCTGATATCAAAC CTGCTCCAGCTAAAGCCAACCGTTCAAGACCTGCAAGCGCAAGAAGAAGTGACATGCCTCCTGTAAAGAATGAGGATTTGATTCCTGGGGCAACTTATAC AGGCAAAGTTAAGTCTATACAACCATTTGGTGCCTTTATTGATTTTGGAGCTTTCACAGATGGGCTTGTTCATGTTTCAATGTTGAGTGATGACTACGTT AAGGATGTTTCAAGTGTTGTTTCTGTTGGACAAGAAGTGAAAGTGAAGCTGATTGAAGTGAACACTGAAACTCGGCGCATTTCACTCTCCATGCGTGAAA ATGCAGACACTGGTAAGCAACGTAAAGAGGCACCCATCAATGCAGAGAAAGGTGGACCTGGGAAGAGGAACACTTCAAAACCAGGTCCAAGGAGAGATGG TGGTAGGAAAAGCTCAAAGTTTGTCATAGGGCAGGAACTGCAGGGTACAGTGAAGAATATGACTAGGAGTGGTGCTTTTATTTCTCTTCCTGATGGGGAG GAAGGATTTCTACCAATATCCGAGGAACCTGATGATGGATTTGGGAATGTTATGGGCAACACTTCCCTAGAGGTTGGTCAAGAAGTCAGTGTGCGCGTTT TGCGTATCTCAAGAGGACAAGCAACGTTGACTATGAAGAAAGCGGAAGATGTTCCAAAAGTGGACTCAGTCATTGGCCAAGGCGTTGTCCATGTTGCAAC AAACCCTTTTTTATTGGCTTTTCGTAAGAATAAGGATATTGCTGAGTTTTTGGATGAGAGGGACAGAATTCAGAGAACTGTTGAAAAATCTTCAACCACA GAAACTTTAGAAGAAACCAAGGGAACTGTCAAGGAAGATGAAACATTATTGAATGTTCCTGATGCGAAGGATGGACCAGAAAGCACCGAGACTTTGATAG AGGATGCTCCTTCTTCAGTAAAACATACTGATGCAGATGATCTTTCTGGAGAAGATGCGGGACCCGGTGCATTTGATGTCTCAACAACTATCGTCGATGG TGAAAGAGATTCAATCGGCAATGTCTCTAGCCCAACAGAAGCTATAGACGATGCTGCTGAGAAGGAAACAAAAGAGGTGGCTTCTGGAAGTTTGGCCCCT GAAGGGGATCTACCTACTGTGAATCCAATTATTGAGGAAGCCCCTCAGACAGATGTAACAACAAGCACTTTAGAAACTGGGTCACCTCTTGGAATAGCTA ATGAAAATGCAATCAAAATTGGAGGTGATCCTATCGTCGCAGAACACGAAAAACAATCACAGACATCTAATGCAAAGGAGGAATTTGCTGCTGTAGCATT AACAAACGTTGATGTGGTTGAACCTAGCCCTGATAAAATTGATACTATTATAGAGTCAGATATCACATCAAGTGTACCAGCTCCCCAAGAAACTGCAGAT GGGACGGAAGAAAATGATCAAGTTCCCCCTCCTGAAACTCTTGCTACTGAAGTCATAGAAGGTTCCATTGAAGACTCTAAAGAAGAAGAGAAAAATCAAA CACTAGCAGCAGAGAATGAATATTTGGCTACCTCAGAAGTTGAAGATAAAGTGGTTGCAATTGCATCCGAGGATAATAGCAGCTTATCCATTTCTAATGG GCAAAACGACATTACCGCTTCAGATGAAGGCTCGAGTAAAGCAACTATTTCCCCGGCACTTGTGAAGCATCTTCAGGAAGAAACAGGAGCTGGAATGATG GACTGCAAAAAAGCTCTGACAGAGACTGATGGGGACATTGTTAAAGCACAAGAGTTCCTTAGGAAAAAAGGTCTATCAAGTGCAGAAAAGAAAGCAAGCA GAGTAACTGCTGAAGGAAGAATAGGTTCTTACATCCATGACAGCAGAATTGGTGTTTTGGTAGAAGTAAACTGCGAGACAGATTTTGTCTCCCGGGGTGA AATTTTTAAAGAGATGGTTGACGATATAGCCATGCAAGTGGCTGCATGCCCTCAAGTGGAGTATCTTGTTACCGAAGATGTGCCTGAGGAAATCATAAAT AAAGAAAAAGAGATAGAAATGCAAAAAGAAGATCTTTTATCAAAACCGGAACAGTTTAGATCGAAGATTGTTGAAGGGAGGATAAGAAAAAGACTTGAGG AGCTGGCATTGCTTGAACAACCCTACATTAAGAATGATAAAGTGGCAGTAAAGGACTTTGTTAAGCAGACTGTTGCAACTATCGGAGAAAATATTAAAGT TAAGAGGTTTGTGCGTTTCAACCTTGGGGAGGGTTTGGAGAAGAAAAGCCAGGATTTTGCTGCTGAAGTGGCTGCACAAACTGCAGCTAAGACAACACCT ACTACACCAGCAATAGAGCAACCTGCTGTTACAGAAGCCAAGGAGCCCGAGAAAAAGCAAGCAACAGTAACAGTCTCTGCCGCATTGGTTAAACAACTAA GGGAAGAAACCGGAGCCGGAATGATGGACTGTAAGAAAGCTCTTGCTGAAACTGGAGGCGATCTTGAAAAGGCCCAAGAATATCTCAGAAAGAAGGGTCT CTCATCTGCTGACAAGAAATCCAGTAGGCTAGCAGCTGAAGGCAGAATCGGTTCATACATTCATGATTCGCGCATCGGCGTTCTAATCGAAGTGAACTGT GAAACTGACTTTGTTGGCAGAAGCGAAAAATTCAAAGAGTTGGTCGATGATCTTGCAATGCAAGTTGTGGCATGCCCGCAGGTGCAATATGTATCCATTG AAGATATTCCAGAGACCATCAGGAACAAGGAAAAGGAACTTGAGATGCAAAGAGAGGACCTTGCCTCAAAACCTGAAAGCATAAGAGAGAAAATTGTTGA GGGAAGGGTCTCAAAGAGACTTGGGGAACTTGCACTTCTAGAGCAGCCTTATGTTAAGGATGATAGTCTTTTAGTGAAGGACTTGGTGAAGCAAAGTGTA GCTGCTATTGGAGAGAACATCAAAGTAAGGCGTTTTGTAAAGTTCACTCTAGGAGAGACTATTGAAAGTGCAACAGAAGTAGCAGCATAAGTTGAAAAGT GTCATAAAAACATGAATGGTAACATGGGAAACCTTATATGTTACAAGAGAATGTGAAGAGGTATGGAACAGGTTCAGAGTAGTTTGAAAAACAGTATGAT ACTGAATAAGGTGCAGTCGGCATGGACACATTTTACTAATCTGTATCCACATTGAGGTACACGAGAACAATAGTTTTTTAATTAATTTTATGCAGTTTGT ATGTTGAAAAACTGGTGGATGCATTTTTTTAATTACCAGTTTCATTAAGTTTTAAAGTACCAGTTTCTTAAATTCTTGAATGGTTTCTTAAAACTGGTTG AGATGGAACCTTAATATGGGTTCGGCCTAATTTTTCTTCTCATAGTCAAATTGGTTTTAAGATTATTTGACTCATTTTAAATCCATT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_56569; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_71646
| Blastp | Elongation factor Ts from Synechococcus with 63.89% of identity |
|---|---|
| Blastx | Elongation factor Ts from Cyanothece with 63.51% of identity |
| Eggnog | Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity)(COG0264) |
| Kegg | Link to kegg annotations (SYNPCC7002_A1958) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019457841.1) |
| Pfam | S1 RNA binding domain (PF00575.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |